cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.md.bam --read_filter QualCalFilter,table=1136_5KC-T1-TDNA-1_A23MHWWLT4_1.table,indel=false --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.table.post --algo ReadWriter 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 34.6s, est remaining 656.9s, peak mem 5574MB, user 850.5s, sys 7.3s, output queue size 52
progress 10% @chr2:80000001, elapsed 62.0s, est remaining 558.2s, peak mem 7276MB, user 1721.6s, sys 11.0s, output queue size 74
progress 15% @chr3:8000001, elapsed 90.0s, est remaining 510.1s, peak mem 7666MB, user 2563.0s, sys 14.8s, output queue size 122
progress 20% @chr3:174000001, elapsed 115.4s, est remaining 461.7s, peak mem 7832MB, user 3334.4s, sys 17.8s, output queue size 141
progress 25% @chr4:135000001, elapsed 137.5s, est remaining 412.6s, peak mem 7898MB, user 4004.7s, sys 20.2s, output queue size 302
progress 30% @chr5:105000001, elapsed 155.0s, est remaining 361.6s, peak mem 7949MB, user 4525.8s, sys 21.6s, output queue size 464
progress 35% @chr6:91000001, elapsed 180.7s, est remaining 335.6s, peak mem 8239MB, user 5201.7s, sys 23.7s, output queue size 625
progress 40% @chr7:56000001, elapsed 208.1s, est remaining 312.1s, peak mem 8609MB, user 6053.3s, sys 26.5s, output queue size 195
progress 45% @chr8:74000001, elapsed 238.7s, est remaining 291.8s, peak mem 8763MB, user 7008.5s, sys 29.5s, output queue size 204
progress 50% @chr8:143000001, elapsed 263.2s, est remaining 263.2s, peak mem 8958MB, user 7648.8s, sys 31.8s, output queue size 366
progress 55% @chr10:118000001, elapsed 293.3s, est remaining 240.0s, peak mem 9057MB, user 8598.0s, sys 34.7s, output queue size 348
progress 60% @chr12:3000001, elapsed 325.8s, est remaining 217.2s, peak mem 9061MB, user 9571.1s, sys 37.2s, output queue size 510
progress 65% @chr13:26000001, elapsed 355.4s, est remaining 191.4s, peak mem 9168MB, user 10363.6s, sys 39.5s, output queue size 672
progress 70% @chr14:78000001, elapsed 373.5s, est remaining 160.1s, peak mem 9168MB, user 11123.5s, sys 41.4s, output queue size 299
progress 75% @chr16:42000001, elapsed 406.7s, est remaining 135.6s, peak mem 9203MB, user 11992.1s, sys 44.1s, output queue size 461
progress 80% @chr17:74000001, elapsed 454.7s, est remaining 113.7s, peak mem 9246MB, user 13320.9s, sys 47.8s, output queue size 623
progress 85% @chr20:9000001, elapsed 497.9s, est remaining 87.9s, peak mem 9246MB, user 14816.5s, sys 51.6s, output queue size 351
progress 90% @chrX:30000001, elapsed 527.6s, est remaining 58.6s, peak mem 9287MB, user 15685.4s, sys 54.2s, output queue size 513
progress 95% @chrY:54000001, elapsed 548.5s, est remaining 28.9s, peak mem 9341MB, user 16221.9s, sys 56.1s, output queue size 674
progress 100% @chrX:67000001, elapsed 565.3s, est remaining 0.0s, peak mem 9341MB, user 16967.2s, sys 58.6s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal ReadWriter
license: sentieon:QualCal=31 sentieon:ReadWriter=31
input file size: 50938789543
output file size: 77880768818
reads: 986308211
contig: 3367 intervals 3217346917 bases
ReadQualCal::clearEPSVecOne: 8 calls 0.000 user 0.001 sys 0.016 real
ReadQualCal::delayed_init: 1 calls 0.004 user 0.001 sys 0.017 real
ReadQualCal::init: 1 calls 0.000 user 0.000 sys 0.008 real
advance: 3219322 calls 1406.319 user 18.765 sys 1446.508 real
done: 1 calls 0.525 user 0.436 sys 0.968 real
exec_no_coor: 1 calls 0.018 user 0.000 sys 0.015 real
execute: 1 calls 0.009 user 0.000 sys 566.179 real
fetch: 3219323 calls 67.923 user 0.526 sys 97.922 real
fetch_reads: 3219322 calls 230.270 user 0.717 sys 234.650 real
fetch_ref: 1924248 calls 7.421 user 1.468 sys 9.183 real
fetch_vcf: 1924248 calls 123.604 user 1.718 sys 127.726 real
idle: 37908 calls 56.707 user 0.219 sys 198.118 real
init: 1 calls 0.004 user 0.001 sys 0.024 real
update: 2247846 calls 4375.182 user 2.862 sys 4484.371 real
write: 3219323 calls 12631.900 user 27.851 sys 12766.386 real
overall: 9794859008 mem 17048.573 user 86.807 sys 568.044 real
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 --algo QualCal --plot --before 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.table --after 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.table.post 1136_5KC-T1-TDNA-1_A23MHWWLT4_1.csv
This software is licensed to bgold@natera.com by Sentieon Inc.
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: 1f8bfbff fffab20b
  extended: f1bf07ab 1a407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) Platinum 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
ReadQualCal::init: 2 calls 0.044 user 0.006 sys 0.050 real
done: 1 calls 0.089 user 0.011 sys 0.096 real
idle: 61 calls 0.001 user 0.000 sys 31.428 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 86753280 mem 0.106 user 0.044 sys 1.054 real