File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/dc/da574ca1e25d93090bc5ceb9b0e2f2/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4XR-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4XR-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 4.2s, est remaining 79.5s, peak mem 3476MB, user 98.2s, sys 2.7s, output queue size 145
progress 10% @chr1:248000001, elapsed 7.4s, est remaining 66.8s, peak mem 4278MB, user 200.2s, sys 5.8s, output queue size 117
progress 15% @chr2:237000001, elapsed 10.4s, est remaining 59.1s, peak mem 6058MB, user 293.2s, sys 7.3s, output queue size 203
progress 20% @chr3:174000001, elapsed 13.2s, est remaining 52.7s, peak mem 6058MB, user 376.0s, sys 8.8s, output queue size 174
progress 25% @chr4:129000001, elapsed 15.6s, est remaining 46.7s, peak mem 6109MB, user 451.3s, sys 10.2s, output queue size 302
progress 30% @chr5:107000001, elapsed 17.5s, est remaining 40.9s, peak mem 6242MB, user 505.8s, sys 10.9s, output queue size 464
progress 35% @chr5:150000001, elapsed 20.3s, est remaining 37.6s, peak mem 6540MB, user 586.4s, sys 11.7s, output queue size 625
progress 40% @chr7:66000001, elapsed 23.5s, est remaining 35.2s, peak mem 6725MB, user 672.7s, sys 12.5s, output queue size 197
progress 45% @chr8:67000001, elapsed 26.9s, est remaining 32.9s, peak mem 6882MB, user 785.1s, sys 14.0s, output queue size 204
progress 50% @chr9:102000001, elapsed 29.6s, est remaining 29.6s, peak mem 6882MB, user 857.2s, sys 14.6s, output queue size 366
progress 55% @chr10:103000001, elapsed 33.1s, est remaining 27.1s, peak mem 7110MB, user 952.1s, sys 15.3s, output queue size 527
progress 60% @chr11:130000001, elapsed 36.2s, est remaining 24.1s, peak mem 7110MB, user 1070.3s, sys 16.4s, output queue size 510
progress 65% @chr13:39000001, elapsed 39.3s, est remaining 21.1s, peak mem 7110MB, user 1145.2s, sys 17.0s, output queue size 672
progress 70% @chr14:35000001, elapsed 41.2s, est remaining 17.7s, peak mem 7110MB, user 1208.2s, sys 17.5s, output queue size 833
progress 75% @chr16:42000001, elapsed 44.9s, est remaining 15.0s, peak mem 7110MB, user 1329.0s, sys 18.6s, output queue size 461
progress 80% @chr18:1, elapsed 50.3s, est remaining 12.6s, peak mem 7213MB, user 1474.4s, sys 19.7s, output queue size 623
progress 85% @chr20:9000001, elapsed 54.7s, est remaining 9.7s, peak mem 7213MB, user 1610.3s, sys 20.8s, output queue size 785
progress 90% @chrX:34000001, elapsed 58.1s, est remaining 6.5s, peak mem 7271MB, user 1739.1s, sys 21.6s, output queue size 513
progress 95% @chrY:52000001, elapsed 60.6s, est remaining 3.2s, peak mem 7675MB, user 1807.7s, sys 22.2s, output queue size 675
progress 100% @chrX:67000001, elapsed 68.3s, est remaining 0.0s, peak mem 7740MB, user 1909.2s, sys 22.9s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 61364023637
reads: 1205609827
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 953.564 user 19.926 sys 974.318 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.010 user 0.000 sys 0.014 real
execute: 1 calls 0.002 user 0.000 sys 68.280 real
idle: 241 calls 0.144 user 0.001 sys 213.647 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8116850688 mem 1910.240 user 23.306 sys 69.660 real