Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/3498bfd2fcb7d554d2a6dd07e822e1/659_d0M-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b6/3498bfd2fcb7d554d2a6dd07e822e1/659_d0M-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/74c4a287a5fbcf17c2456a5fdf9dc4/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8e/74c4a287a5fbcf17c2456a5fdf9dc4/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_d0M-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_d0M-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:46000001, elapsed 4.3s, est remaining 81.9s, peak mem 3570MB, user 103.8s, sys 3.2s, output queue size 146
progress 10% @chr1:226000001, elapsed 8.1s, est remaining 72.6s, peak mem 4331MB, user 213.8s, sys 4.8s, output queue size 117
progress 15% @chr3:11000001, elapsed 12.4s, est remaining 70.5s, peak mem 7598MB, user 335.7s, sys 7.8s, output queue size 203
progress 20% @chr3:178000001, elapsed 15.7s, est remaining 62.8s, peak mem 7880MB, user 443.0s, sys 10.7s, output queue size 283
progress 25% @chr4:133000001, elapsed 18.6s, est remaining 55.7s, peak mem 7978MB, user 538.2s, sys 11.8s, output queue size 302
progress 30% @chr5:106000001, elapsed 20.7s, est remaining 48.4s, peak mem 7978MB, user 606.2s, sys 12.7s, output queue size 464
progress 35% @chr6:88000001, elapsed 24.0s, est remaining 44.7s, peak mem 7978MB, user 689.7s, sys 14.0s, output queue size 625
progress 40% @chr7:47000001, elapsed 27.9s, est remaining 41.8s, peak mem 7978MB, user 795.4s, sys 14.9s, output queue size 786
progress 45% @chr8:82000001, elapsed 32.7s, est remaining 40.0s, peak mem 8545MB, user 927.6s, sys 16.1s, output queue size 948
progress 50% @chr9:87000001, elapsed 37.1s, est remaining 37.1s, peak mem 8545MB, user 1058.5s, sys 17.2s, output queue size 366
progress 55% @chr10:101000001, elapsed 41.8s, est remaining 34.2s, peak mem 8545MB, user 1208.8s, sys 18.6s, output queue size 527
progress 60% @chr12:1000001, elapsed 46.9s, est remaining 31.2s, peak mem 8545MB, user 1363.6s, sys 19.8s, output queue size 510
progress 65% @chr13:23000001, elapsed 51.8s, est remaining 27.9s, peak mem 8545MB, user 1505.3s, sys 20.8s, output queue size 672
progress 70% @chr14:85000001, elapsed 54.6s, est remaining 23.4s, peak mem 8545MB, user 1583.4s, sys 21.5s, output queue size 833
progress 75% @chr16:41000001, elapsed 59.7s, est remaining 19.9s, peak mem 8545MB, user 1741.0s, sys 22.7s, output queue size 995
progress 80% @chr17:65000001, elapsed 66.0s, est remaining 16.5s, peak mem 8545MB, user 1943.9s, sys 24.4s, output queue size 623
progress 85% @chr19:45000001, elapsed 71.9s, est remaining 12.7s, peak mem 8545MB, user 2123.5s, sys 25.8s, output queue size 785
progress 90% @chrX:30000001, elapsed 75.6s, est remaining 8.4s, peak mem 8708MB, user 2246.5s, sys 27.1s, output queue size 947
progress 95% @chrY:55000001, elapsed 78.4s, est remaining 4.1s, peak mem 8708MB, user 2305.9s, sys 27.6s, output queue size 1109
progress 100% @chrX:67000001, elapsed 85.7s, est remaining 0.0s, peak mem 8708MB, user 2452.0s, sys 29.0s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 62651370106
reads: 1242257820
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 991.720 user 22.973 sys 1014.515 real
done: 1 calls 0.318 user 0.039 sys 0.362 real
exec_no_coor: 1 calls 0.009 user 0.000 sys 0.018 real
execute: 1 calls 0.004 user 0.003 sys 85.686 real
idle: 248 calls 0.168 user 0.001 sys 215.701 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9131995136 mem 2453.810 user 29.536 sys 87.692 real