File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/3c0cd8f2e44642d7e69013418cb20e/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_dm4-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_dm4-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 4.4s, est remaining 82.9s, peak mem 2186MB, user 109.1s, sys 2.4s, output queue size 44
progress 10% @chr2:68000001, elapsed 7.7s, est remaining 69.1s, peak mem 2724MB, user 217.3s, sys 3.7s, output queue size 48
progress 15% @chr2:237000001, elapsed 11.6s, est remaining 65.5s, peak mem 3582MB, user 331.4s, sys 5.4s, output queue size 122
progress 20% @chr3:161000001, elapsed 15.0s, est remaining 59.9s, peak mem 3728MB, user 436.8s, sys 6.5s, output queue size 141
progress 25% @chr4:132000001, elapsed 18.0s, est remaining 54.1s, peak mem 3752MB, user 531.0s, sys 7.1s, output queue size 302
progress 30% @chr5:99000001, elapsed 20.5s, est remaining 47.8s, peak mem 3901MB, user 608.3s, sys 7.7s, output queue size 464
progress 35% @chr6:78000001, elapsed 23.9s, est remaining 44.3s, peak mem 4118MB, user 695.6s, sys 8.5s, output queue size 625
progress 40% @chr7:56000001, elapsed 27.4s, est remaining 41.0s, peak mem 4195MB, user 807.4s, sys 9.3s, output queue size 195
progress 45% @chr8:72000001, elapsed 31.2s, est remaining 38.1s, peak mem 4397MB, user 927.7s, sys 10.1s, output queue size 204
progress 50% @chr9:88000001, elapsed 34.3s, est remaining 34.3s, peak mem 4420MB, user 1016.6s, sys 10.7s, output queue size 366
progress 55% @chr10:118000001, elapsed 38.3s, est remaining 31.4s, peak mem 4444MB, user 1143.2s, sys 11.5s, output queue size 348
progress 60% @chr11:121000001, elapsed 42.3s, est remaining 28.2s, peak mem 4444MB, user 1257.7s, sys 12.2s, output queue size 510
progress 65% @chr13:31000001, elapsed 46.2s, est remaining 24.9s, peak mem 4458MB, user 1378.5s, sys 12.9s, output queue size 672
progress 70% @chr14:79000001, elapsed 48.6s, est remaining 20.8s, peak mem 4458MB, user 1470.8s, sys 13.3s, output queue size 299
progress 75% @chr16:42000001, elapsed 52.7s, est remaining 17.6s, peak mem 4477MB, user 1572.5s, sys 14.0s, output queue size 461
progress 80% @chr17:50000001, elapsed 58.5s, est remaining 14.6s, peak mem 4554MB, user 1747.1s, sys 14.8s, output queue size 190
progress 85% @chr19:49000001, elapsed 63.4s, est remaining 11.2s, peak mem 4569MB, user 1912.3s, sys 15.8s, output queue size 351
progress 90% @chrX:32000001, elapsed 66.7s, est remaining 7.4s, peak mem 4661MB, user 2012.7s, sys 16.2s, output queue size 513
progress 95% @chrY:55000001, elapsed 68.7s, est remaining 3.6s, peak mem 4733MB, user 2083.6s, sys 16.8s, output queue size 240
progress 100% @chr22:23000001, elapsed 72.8s, est remaining 0.0s, peak mem 4733MB, user 2139.1s, sys 17.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 50881977164
reads: 1106159925
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 856.243 user 14.949 sys 873.201 real
done: 1 calls 0.306 user 0.029 sys 0.344 real
exec_no_coor: 1 calls 0.000 user 0.020 sys 0.048 real
execute: 1 calls 0.005 user 0.003 sys 72.898 real
idle: 164 calls 0.158 user 0.000 sys 142.318 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 4963250176 mem 2141.744 user 17.768 sys 74.970 real