File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c1/0fe8015299345eeace0d1ec691c7cc/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 2.8s, est remaining 53.8s, peak mem 1605MB, user 67.7s, sys 1.5s, output queue size 145
progress 10% @chr2:69000001, elapsed 4.9s, est remaining 44.1s, peak mem 1953MB, user 138.6s, sys 2.4s, output queue size 48
progress 15% @chr2:238000001, elapsed 7.3s, est remaining 41.2s, peak mem 2295MB, user 207.8s, sys 3.6s, output queue size 122
progress 20% @chr3:154000001, elapsed 9.4s, est remaining 37.7s, peak mem 2351MB, user 274.1s, sys 4.5s, output queue size 141
progress 25% @chr4:132000001, elapsed 11.4s, est remaining 34.1s, peak mem 2445MB, user 333.7s, sys 5.1s, output queue size 302
progress 30% @chr5:104000001, elapsed 12.9s, est remaining 30.1s, peak mem 2506MB, user 381.2s, sys 5.5s, output queue size 464
progress 35% @chr6:81000001, elapsed 15.1s, est remaining 28.0s, peak mem 2628MB, user 445.5s, sys 6.0s, output queue size 106
progress 40% @chr7:45000001, elapsed 17.3s, est remaining 25.9s, peak mem 2628MB, user 509.5s, sys 6.5s, output queue size 195
progress 45% @chr8:58000001, elapsed 19.8s, est remaining 24.2s, peak mem 2636MB, user 583.7s, sys 7.2s, output queue size 204
progress 50% @chr9:88000001, elapsed 21.8s, est remaining 21.8s, peak mem 2724MB, user 642.9s, sys 7.6s, output queue size 366
progress 55% @chr10:109000001, elapsed 24.3s, est remaining 19.9s, peak mem 2846MB, user 725.8s, sys 8.1s, output queue size 348
progress 60% @chr11:130000001, elapsed 27.0s, est remaining 18.0s, peak mem 2846MB, user 800.2s, sys 8.6s, output queue size 510
progress 65% @chr12:56000001, elapsed 29.4s, est remaining 15.9s, peak mem 2868MB, user 887.1s, sys 9.1s, output queue size 138
progress 70% @chr13:113000001, elapsed 31.1s, est remaining 13.3s, peak mem 2868MB, user 937.2s, sys 9.4s, output queue size 299
progress 75% @chr16:42000001, elapsed 33.7s, est remaining 11.2s, peak mem 2868MB, user 1007.6s, sys 9.8s, output queue size 461
progress 80% @chr18:10000001, elapsed 37.8s, est remaining 9.5s, peak mem 2952MB, user 1128.3s, sys 10.4s, output queue size 189
progress 85% @chr20:9000001, elapsed 41.3s, est remaining 7.3s, peak mem 2964MB, user 1252.8s, sys 11.2s, output queue size 73
progress 90% @chrX:34000001, elapsed 43.5s, est remaining 4.8s, peak mem 3062MB, user 1320.7s, sys 11.6s, output queue size 78
progress 95% @chrY:54000001, elapsed 44.9s, est remaining 2.4s, peak mem 3083MB, user 1360.3s, sys 12.0s, output queue size 240
progress 100% @chr22:23000001, elapsed 47.4s, est remaining 0.0s, peak mem 3083MB, user 1393.7s, sys 12.3s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34430769148
reads: 702845646
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 563.462 user 10.151 sys 573.573 real
done: 1 calls 0.319 user 0.030 sys 0.351 real
exec_no_coor: 1 calls 0.009 user 0.009 sys 0.028 real
execute: 1 calls 0.003 user 0.001 sys 47.429 real
idle: 138 calls 0.139 user 0.001 sys 104.338 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 3233406976 mem 1395.679 user 12.767 sys 49.395 real