File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/04/bd3fa4ca086bae136292b27a093a8c/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 1.8s, est remaining 34.6s, peak mem 829MB, user 46.6s, sys 1.0s, output queue size 42
progress 10% @chr2:83000001, elapsed 3.2s, est remaining 29.1s, peak mem 1261MB, user 91.3s, sys 1.5s, output queue size 70
progress 15% @chr2:230000001, elapsed 4.8s, est remaining 27.5s, peak mem 1599MB, user 140.5s, sys 2.6s, output queue size 57
progress 20% @chr3:154000001, elapsed 6.4s, est remaining 25.5s, peak mem 1599MB, user 188.1s, sys 3.2s, output queue size 141
progress 25% @chr4:130000001, elapsed 7.7s, est remaining 23.2s, peak mem 1599MB, user 231.4s, sys 3.6s, output queue size 16
progress 30% @chr5:107000001, elapsed 8.8s, est remaining 20.6s, peak mem 1599MB, user 265.7s, sys 4.0s, output queue size 19
progress 35% @chr6:76000001, elapsed 10.4s, est remaining 19.3s, peak mem 1671MB, user 307.2s, sys 4.5s, output queue size 70
progress 40% @chr7:71000001, elapsed 11.9s, est remaining 17.8s, peak mem 1829MB, user 355.5s, sys 5.1s, output queue size 194
progress 45% @chr8:71000001, elapsed 13.5s, est remaining 16.5s, peak mem 1877MB, user 402.5s, sys 5.6s, output queue size 204
progress 50% @chr9:88000001, elapsed 14.8s, est remaining 14.8s, peak mem 1877MB, user 440.9s, sys 5.9s, output queue size 187
progress 55% @chr10:98000001, elapsed 16.3s, est remaining 13.4s, peak mem 1877MB, user 491.0s, sys 6.3s, output queue size 150
progress 60% @chr12:5000001, elapsed 17.9s, est remaining 11.9s, peak mem 1887MB, user 540.5s, sys 6.8s, output queue size 59
progress 65% @chr13:30000001, elapsed 19.4s, est remaining 10.5s, peak mem 1974MB, user 584.7s, sys 7.3s, output queue size 138
progress 70% @chr14:50000001, elapsed 20.6s, est remaining 8.8s, peak mem 2050MB, user 621.7s, sys 7.7s, output queue size 299
progress 75% @chr16:41000001, elapsed 22.1s, est remaining 7.4s, peak mem 2109MB, user 661.8s, sys 8.2s, output queue size 461
progress 80% @chr17:31000001, elapsed 24.2s, est remaining 6.0s, peak mem 2109MB, user 727.1s, sys 8.7s, output queue size 86
progress 85% @chr19:55000001, elapsed 26.1s, est remaining 4.6s, peak mem 2177MB, user 793.8s, sys 9.2s, output queue size 36
progress 90% @chrX:35000001, elapsed 27.5s, est remaining 3.1s, peak mem 2177MB, user 832.7s, sys 9.7s, output queue size 78
progress 95% @chrY:53000001, elapsed 28.5s, est remaining 1.5s, peak mem 2177MB, user 867.0s, sys 10.1s, output queue size 211
progress 100% @chrX:154000001, elapsed 29.1s, est remaining 0.0s, peak mem 2177MB, user 882.8s, sys 10.3s, output queue size 3453
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 34425376535
reads: 539909111
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 519.262 user 8.484 sys 528.691 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.009 user 0.000 sys 0.017 real
execute: 1 calls 0.002 user 0.001 sys 29.094 real
idle: 75 calls 0.137 user 0.000 sys 38.375 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2283372544 mem 883.933 user 10.401 sys 30.309 real