File Info

Filename
output/Reports/Quality_Metrics.csv
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/52/928d434150a22d0ca11301a5843191/output/Reports/Quality_Metrics.csv
Size
10.0 KB
Task
DAQ:BCL_TO_FASTQ:BCLCONVERT (A23MHWWLT4;L003)
Attempt

Content

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Lane SampleID index index2 ReadNumber Yield YieldQ30 QualityScoreSum Mean Quality Score (PF) % Q30
3 1029_N5D-T1-TDNA-1_A23MHWWLT4_1 TAGCGAGGCT TTGCTCACGG 1 19792035382 18209812548 759820143492 38.39 0.92
3 1029_N5D-T1-TDNA-1_A23MHWWLT4_1 TAGCGAGGCT TTGCTCACGG 2 19792035382 16939529378 733031665664 37.04 0.86
3 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1 CCAACTGTAT GCGCTAGAGA 1 14262031238 13448695403 554100337004 38.85 0.94
3 1136_4Z5-T1-TDNA-1_A23MHWWLT4_1 CCAACTGTAT GCGCTAGAGA 2 14262031238 13176683810 548254297352 38.44 0.92
3 FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 GAGTAGTGAC GCGATGCCAA 1 12108898984 11077512127 463714795996 38.30 0.91
3 FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1 GAGTAGTGAC GCGATGCCAA 2 12108898984 10110874372 443189829532 36.60 0.83
3 NTC_0002_0015_A23MHWWLT4_1 CCAGTATTCT ACGAAGCGAT 1 914003 633276 30660516 33.55 0.69
3 NTC_0002_0015_A23MHWWLT4_1 CCAGTATTCT ACGAAGCGAT 2 914003 273564 22494732 24.61 0.30
3 1136_85O-T1-TDNA-1_A23MHWWLT4_1 ATCATACCGC ATGTCGTACT 1 8177385521 7613288570 315598935488 38.59 0.93
3 1136_85O-T1-TDNA-1_A23MHWWLT4_1 ATCATACCGC ATGTCGTACT 2 8177385521 7344265117 310060983220 37.92 0.90
3 1136_8DV-T1-TDNA-1_A23MHWWLT4_1 ATTCGCACTA TCTGTATGGT 1 8617138593 8057782838 333148692524 38.66 0.94
3 1136_8DV-T1-TDNA-1_A23MHWWLT4_1 ATTCGCACTA TCTGTATGGT 2 8617138593 7859561059 329201352472 38.20 0.91
3 1029_IWL-T1-TDNA-1_A23MHWWLT4_1 CTCTTCAGCA TTGTCTCTAC 1 6655816958 6196309698 256522453140 38.54 0.93
3 1029_IWL-T1-TDNA-1_A23MHWWLT4_1 CTCTTCAGCA TTGTCTCTAC 2 6655816958 6175824338 256389490520 38.52 0.93
3 659_cuO-T1-TDNA-1_A23MHWWLT4_1 CTGTATGCCA TTCCGGCTGT 1 1705344019 1584696992 65713646204 38.53 0.93
3 659_cuO-T1-TDNA-1_A23MHWWLT4_1 CTGTATGCCA TTCCGGCTGT 2 1705344019 1543040891 64850886356 38.03 0.90
3 1136_3U6-T1-TDNA-1_A23MHWWLT4_1 TCTGACTATG TAACCAGATC 1 18610412515 17144148952 714856880416 38.41 0.92
3 1136_3U6-T1-TDNA-1_A23MHWWLT4_1 TCTGACTATG TAACCAGATC 2 18610412515 16009101350 690956013524 37.13 0.86
3 659_dm4-T1-TDNA-1_A23MHWWLT4_1 TGTGACGTAT GCAGCGTTAG 1 10420825741 9833524912 404919591436 38.86 0.94
3 659_dm4-T1-TDNA-1_A23MHWWLT4_1 TGTGACGTAT GCAGCGTTAG 2 10420825741 9697169296 401997684232 38.58 0.93
3 659_bgw-T1-TDNA-1_A23MHWWLT4_1 AGAAGATTGG AGAAGGTACT 1 12330285218 11512348091 476683548992 38.66 0.93
3 659_bgw-T1-TDNA-1_A23MHWWLT4_1 AGAAGATTGG AGAAGGTACT 2 12330285218 11094296290 467990371732 37.95 0.90
3 659_eKx-T1-TDNA-1_A23MHWWLT4_1 ATCCAGCATG AGAGCTCTAC 1 35352573 22429336 1143908776 32.36 0.63
3 659_eKx-T1-TDNA-1_A23MHWWLT4_1 ATCCAGCATG AGAGCTCTAC 2 35352573 11597455 899772172 25.45 0.33
3 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1 GCGCCATATA GAACCTCCTA 1 7737903494 7247656087 299502909268 38.71 0.94
3 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1 GCGCCATATA GAACCTCCTA 2 7737903494 7083083113 296150903512 38.27 0.92
3 1136_5L2-T1-TDNA-1_A23MHWWLT4_1 CACTCGCATA GAACGCGACA 1 9588248283 8848365987 368628571680 38.45 0.92
3 1136_5L2-T1-TDNA-1_A23MHWWLT4_1 CACTCGCATA GAACGCGACA 2 9588248283 8254278741 356145348180 37.14 0.86
3 659_Lx-T1-TDNA-1_A23MHWWLT4_1 AAGGTCAATG GCATTATAGG 1 43364935 28848251 1430289308 32.98 0.67
3 659_Lx-T1-TDNA-1_A23MHWWLT4_1 AAGGTCAATG GCATTATAGG 2 43364935 18158919 1194220368 27.54 0.42
3 1136_4GR-T1-TDNA-1_A23MHWWLT4_1 GTGACGCACA CGTTGTTGCG 1 9834884888 9143118578 379378778528 38.57 0.93
3 1136_4GR-T1-TDNA-1_A23MHWWLT4_1 GTGACGCACA CGTTGTTGCG 2 9834884888 8811590879 372511716800 37.88 0.90
3 1136_6TL-T1-TDNA-1_A23MHWWLT4_1 TGTCAGGCTT GATTCCTTAC 1 8545063877 7995427638 330649795236 38.69 0.94
3 1136_6TL-T1-TDNA-1_A23MHWWLT4_1 TGTCAGGCTT GATTCCTTAC 2 8545063877 7770774284 326011770236 38.15 0.91
3 1136_27F-T1-TDNA-1_A23MHWWLT4_1 CACGTGATGG TACAACGTGT 1 19583554212 18249746653 756298040200 38.62 0.93
3 1136_27F-T1-TDNA-1_A23MHWWLT4_1 CACGTGATGG TACAACGTGT 2 19583554212 17712777679 745217494540 38.05 0.90
3 1029_T05-T1-TDNA-1_A23MHWWLT4_1 CCATCACGTG TCTCCTGGTT 1 14793528739 13683803912 569321954780 38.48 0.92
3 1029_T05-T1-TDNA-1_A23MHWWLT4_1 CCATCACGTG TCTCCTGGTT 2 14793528739 12956355611 554128879796 37.46 0.88
3 659_d0M-T1-TDNA-1_A23MHWWLT4_1 ACCAGGAATT AGCATGGCAT 1 11828898778 10962186518 455765148032 38.53 0.93
3 659_d0M-T1-TDNA-1_A23MHWWLT4_1 ACCAGGAATT AGCATGGCAT 2 11828898778 10258094053 440897864308 37.27 0.87
3 659_Kh-T1-TDNA-1_A23MHWWLT4_1 TAAGGCTCAC GACGTTACTT 1 11113776519 10156770767 425383318820 38.28 0.91
3 659_Kh-T1-TDNA-1_A23MHWWLT4_1 TAAGGCTCAC GACGTTACTT 2 11113776519 9263548283 406392294656 36.57 0.83
3 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1 TGGCACTGAT GCCATAGAAT 1 9285420350 8739866096 360241069088 38.80 0.94
3 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1 TGGCACTGAT GCCATAGAAT 2 9285420350 8621865149 357839973512 38.54 0.93
3 1029_HTI-T1-TDNA-1_A23MHWWLT4_1 CATATGGTGC ACAGATCTCA 1 13822530638 12916315282 534680387536 38.68 0.93
3 1029_HTI-T1-TDNA-1_A23MHWWLT4_1 CATATGGTGC ACAGATCTCA 2 13822530638 12531088085 526580605940 38.10 0.91
3 1136_86S-T1-TDNA-1_A23MHWWLT4_1 GCACTACCAG GAAGACTTAG 1 13485197997 12581272017 521033499192 38.64 0.93
3 1136_86S-T1-TDNA-1_A23MHWWLT4_1 GCACTACCAG GAAGACTTAG 2 13485197997 12205973642 513318428648 38.07 0.91
3 1136_5KC-T1-TDNA-1_A23MHWWLT4_1 GCATAAGATC GAGAACTGGA 1 9367074204 8703147316 361293991024 38.57 0.93
3 1136_5KC-T1-TDNA-1_A23MHWWLT4_1 GCATAAGATC GAGAACTGGA 2 9367074204 8238122674 351568094692 37.53 0.88
3 1136_5TB-T1-TDNA-1_A23MHWWLT4_1 AAGGTGTACT AGCGCTACAG 1 17352185083 16197371200 670677924484 38.65 0.93
3 1136_5TB-T1-TDNA-1_A23MHWWLT4_1 AAGGTGTACT AGCGCTACAG 2 17352185083 15621834479 658736853692 37.96 0.90
3 1029_I9B-T1-TDNA-1_A23MHWWLT4_1 CTTCTAACCG TGATCAGTCT 1 14849271899 13712819906 571001337908 38.45 0.92
3 1029_I9B-T1-TDNA-1_A23MHWWLT4_1 CTTCTAACCG TGATCAGTCT 2 14849271899 12957965155 555228802696 37.39 0.87
3 1136_00H-T1-TDNA-1_A23MHWWLT4_1 TCGACCAGCA GTTCGAACTC 1 13185326493 11988411435 503361393732 38.18 0.91
3 1136_00H-T1-TDNA-1_A23MHWWLT4_1 TCGACCAGCA GTTCGAACTC 2 13185326493 10938230114 481066397588 36.48 0.83
3 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1 GTGACACGTC CTTACACTGA 1 5021914361 4533830263 190153698772 37.86 0.90
3 1029_BCAN-T1-TDNA-1_A23MHWWLT4_1 GTGACACGTC CTTACACTGA 2 5021914361 4572948786 191442068436 38.12 0.91
3 1136_253-T1-TDNA-1_A23MHWWLT4_1 AATGGACGCG AAGTGCACCG 1 12451543805 11418814727 477284425136 38.33 0.92
3 1136_253-T1-TDNA-1_A23MHWWLT4_1 AATGGACGCG AAGTGCACCG 2 12451543805 10710212755 462374982712 37.13 0.86
3 1136_5Q-T1-TDNA-1_A23MHWWLT4_1 TCTCCGTACT AGTTGTGATC 1 11516235460 10689238695 443998719696 38.55 0.93
3 1136_5Q-T1-TDNA-1_A23MHWWLT4_1 TCTCCGTACT AGTTGTGATC 2 11516235460 10047296888 430538339012 37.39 0.87
3 659_cfy-T1-TDNA-1_A23MHWWLT4_1 TGGAAGCACA TCCAACACCG 1 13422029412 12462039585 517567798908 38.56 0.93
3 659_cfy-T1-TDNA-1_A23MHWWLT4_1 TGGAAGCACA TCCAACACCG 2 13422029412 11990624878 507708188944 37.83 0.89
3 1136_7OW-T1-TDNA-1_A23MHWWLT4_1 GATAGACAAC GTGTTCACGT 1 12384247031 11485622837 477289888160 38.54 0.93
3 1136_7OW-T1-TDNA-1_A23MHWWLT4_1 GATAGACAAC GTGTTCACGT 2 12384247031 10786848041 462655002824 37.36 0.87
3 1136_87O-T1-TDNA-1_A23MHWWLT4_1 AGCGTCTCAT CCTAGGCGAT 1 12348879358 11527105622 477428469884 38.66 0.93
3 1136_87O-T1-TDNA-1_A23MHWWLT4_1 AGCGTCTCAT CCTAGGCGAT 2 12348879358 11020643638 466793322160 37.80 0.89
3 1029_FRC-T1-TDNA-1_A23MHWWLT4_1 CTCTATACTG CGTTCAACCG 1 13505165482 12545307283 520787724076 38.56 0.93
3 1029_FRC-T1-TDNA-1_A23MHWWLT4_1 CTCTATACTG CGTTCAACCG 2 13505165482 11940527157 508191050208 37.63 0.88
3 1029_FZX-T1-TDNA-1_A23MHWWLT4_1 ATAGCCGGTT TCTTATCCGG 1 12200732201 11271339520 469320051040 38.47 0.92
3 1029_FZX-T1-TDNA-1_A23MHWWLT4_1 ATAGCCGGTT TCTTATCCGG 2 12200732201 10486764874 452789610148 37.11 0.86
3 1136_3MV-T1-TDNA-1_A23MHWWLT4_1 GTTCTCATCA CCTCCATTCT 1 12027861361 11074731432 461914384272 38.40 0.92
3 1136_3MV-T1-TDNA-1_A23MHWWLT4_1 GTTCTCATCA CCTCCATTCT 2 12027861361 10359891844 446863623832 37.15 0.86
3 659_bR4-T1-TDNA-1_A23MHWWLT4_1 CAATGCGTGT ATGTTCGCGC 1 15657528995 14449268591 602170701320 38.46 0.92
3 659_bR4-T1-TDNA-1_A23MHWWLT4_1 CAATGCGTGT ATGTTCGCGC 2 15657528995 13367409376 579319917844 37.00 0.85
3 659_cVw-T1-TDNA-1_A23MHWWLT4_1 TGAGTGTACA ATTCGCCGGT 1 15055026311 13915606492 579323459176 38.48 0.92
3 659_cVw-T1-TDNA-1_A23MHWWLT4_1 TGAGTGTACA ATTCGCCGGT 2 15055026311 13025782050 560580193224 37.24 0.87
3 1136_7GC-T1-TDNA-1_A23MHWWLT4_1 TGCTTCCAAG CAGATGTTAC 1 14535883479 13576793688 561855958260 38.65 0.93
3 1136_7GC-T1-TDNA-1_A23MHWWLT4_1 TGCTTCCAAG CAGATGTTAC 2 14535883479 13235520079 554918632060 38.18 0.91
3 1136_76X-T1-TDNA-1_A23MHWWLT4_1 CCTACTCTGC TGCAATTGGC 1 10278373247 9595929524 397323260072 38.66 0.93
3 1136_76X-T1-TDNA-1_A23MHWWLT4_1 CCTACTCTGC TGCAATTGGC 2 10278373247 9275306432 390674474060 38.01 0.90
3 1047_JG-T1-TDNA-1_A23MHWWLT4_1 TCGCTGAGAG AATGCTCTAG 1 29441374792 27622033334 1140709354232 38.75 0.94
3 1047_JG-T1-TDNA-1_A23MHWWLT4_1 TCGCTGAGAG AATGCTCTAG 2 29441374792 26995677042 1127833708464 38.31 0.92
3 1136_3LU-T1-TDNA-1_A23MHWWLT4_1 CGCTAATTGC CCATCGCATT 1 13913163858 12672540687 531602056968 38.21 0.91
3 1136_3LU-T1-TDNA-1_A23MHWWLT4_1 CGCTAATTGC CCATCGCATT 2 13913163858 11518759479 507113007264 36.45 0.83
3 659_cAd-T1-TDNA-1_A23MHWWLT4_1 TCAGCTGTCA ACAGCTCCTG 1 11690305089 10864095642 450987699264 38.58 0.93
3 659_cAd-T1-TDNA-1_A23MHWWLT4_1 TCAGCTGTCA ACAGCTCCTG 2 11690305089 10390613285 441088565276 37.73 0.89
3 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1 AGACGACAGA GAGCTGGAAT 1 7028463818 6554838840 271484464128 38.63 0.93
3 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1 AGACGACAGA GAGCTGGAAT 2 7028463818 6372938045 267744946184 38.09 0.91
3 1136_6G2-T1-TDNA-1_A23MHWWLT4_1 TAGGTCCAGA TGCTCATCCG 1 10335619914 9597667929 398435679708 38.55 0.93
3 1136_6G2-T1-TDNA-1_A23MHWWLT4_1 TAGGTCCAGA TGCTCATCCG 2 10335619914 9238605213 391017854400 37.83 0.89
3 1136_4XR-T1-TDNA-1_A23MHWWLT4_1 TAACCTGAAC TCAATTGACG 1 11478355751 10667144745 442885674216 38.58 0.93
3 1136_4XR-T1-TDNA-1_A23MHWWLT4_1 TAACCTGAAC TCAATTGACG 2 11478355751 10084095464 430581747332 37.51 0.88
3 1136_81F-T1-TDNA-1_A23MHWWLT4_1 GATAGGTGAA AGACGCAAGA 1 11113020311 10329259914 427898546520 38.50 0.93
3 1136_81F-T1-TDNA-1_A23MHWWLT4_1 GATAGGTGAA AGACGCAAGA 2 11113020311 10241516067 426442175976 38.37 0.92
3 Undetermined 1 23427449170 19525385234 856056526292 36.54 0.83
3 Undetermined 2 23427449170 18568852151 833280181532 35.57 0.79
99 rows