cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119986928, elapsed 4.6s, est remaining 86.9s, peak mem 3751MB, user 123.4s, sys 3.4s, output queue size 176
progress 10% @chr2:20670464, elapsed 8.3s, est remaining 75.0s, peak mem 4002MB, user 226.6s, sys 4.3s, output queue size 655
progress 15% @chr2:190199861, elapsed 12.6s, est remaining 71.5s, peak mem 4329MB, user 344.9s, sys 5.6s, output queue size 284
progress 20% @chr3:98788036, elapsed 17.1s, est remaining 68.3s, peak mem 4432MB, user 468.5s, sys 7.0s, output queue size 420
progress 25% @chr4:88486115, elapsed 20.9s, est remaining 62.6s, peak mem 4662MB, user 570.7s, sys 8.1s, output queue size 87
progress 30% @chr5:147878804, elapsed 24.3s, est remaining 56.6s, peak mem 4662MB, user 664.0s, sys 8.7s, output queue size 205
progress 35% @chr6:127143030, elapsed 28.8s, est remaining 53.5s, peak mem 4662MB, user 789.0s, sys 9.5s, output queue size 629
progress 40% @chr7:116769636, elapsed 33.2s, est remaining 49.8s, peak mem 4678MB, user 907.8s, sys 10.5s, output queue size 535
progress 45% @chr9:841839, elapsed 37.8s, est remaining 46.2s, peak mem 4815MB, user 1035.9s, sys 11.6s, output queue size 17
progress 50% @chr10:33207572, elapsed 42.2s, est remaining 42.2s, peak mem 4849MB, user 1155.1s, sys 12.5s, output queue size 105
progress 55% @chr11:48975498, elapsed 46.0s, est remaining 37.6s, peak mem 4859MB, user 1260.7s, sys 13.3s, output queue size 12
progress 60% @chr12:25101178, elapsed 50.3s, est remaining 33.5s, peak mem 4859MB, user 1378.1s, sys 14.2s, output queue size 751
progress 65% @chr13:49382800, elapsed 54.5s, est remaining 29.4s, peak mem 4859MB, user 1495.9s, sys 15.3s, output queue size 63
progress 70% @chr15:43037773, elapsed 58.4s, est remaining 25.0s, peak mem 4859MB, user 1602.8s, sys 16.1s, output queue size 454
progress 75% @chr16:30966884, elapsed 62.6s, est remaining 20.9s, peak mem 4859MB, user 1720.6s, sys 16.8s, output queue size 32
progress 80% @chr17:40339002, elapsed 67.7s, est remaining 16.9s, peak mem 4859MB, user 1863.8s, sys 18.0s, output queue size 665
progress 85% @chr19:5687753, elapsed 72.2s, est remaining 12.7s, peak mem 4859MB, user 1986.4s, sys 18.8s, output queue size 408
progress 90% @chr19:55772602, elapsed 76.3s, est remaining 8.5s, peak mem 4859MB, user 2103.7s, sys 19.7s, output queue size 89
progress 95% @chr22:36501241, elapsed 80.8s, est remaining 4.3s, peak mem 4859MB, user 2226.1s, sys 20.6s, output queue size 27
progress 100% @chr6_GL000251v2_alt:3939000, elapsed 83.4s, est remaining 0.0s, peak mem 4859MB, user 2299.3s, sys 21.1s, output queue size 7
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 34430769148
reads: 702845646
contig: 201779 intervals 37922265 bases
advance: 208647 calls 1204.153 user 15.291 sys 1271.565 real
done: 1 calls 0.427 user 0.387 sys 0.823 real
execute: 1 calls 0.001 user 0.010 sys 83.441 real
fetch_reads: 208647 calls 96.253 user 0.136 sys 102.575 real
fetch_ref: 206637 calls 0.665 user 0.959 sys 1.641 real
fetch_vcf: 206637 calls 78.063 user 1.982 sys 82.187 real
idle: 122 calls 0.280 user 0.000 sys 33.105 real
init: 1 calls 0.000 user 0.010 sys 0.000 real
update: 298126 calls 1030.307 user 2.188 sys 1061.565 real
overall: 5095493632 mem 2513.588 user 22.253 sys 84.987 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory