File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/8f66e2aaa17fd3705447ff2883c397/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_86S-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 4.5s, est remaining 85.8s, peak mem 3526MB, user 103.0s, sys 4.2s, output queue size 146
progress 10% @chr2:90000001, elapsed 8.1s, est remaining 73.2s, peak mem 4178MB, user 222.7s, sys 6.2s, output queue size 79
progress 15% @chr2:201000001, elapsed 12.2s, est remaining 69.4s, peak mem 5814MB, user 344.0s, sys 8.5s, output queue size 122
progress 20% @chr3:174000001, elapsed 15.8s, est remaining 63.2s, peak mem 5814MB, user 450.6s, sys 9.7s, output queue size 174
progress 25% @chr4:124000001, elapsed 19.0s, est remaining 56.9s, peak mem 5814MB, user 549.3s, sys 10.8s, output queue size 302
progress 30% @chr5:44000001, elapsed 21.4s, est remaining 50.0s, peak mem 5814MB, user 625.9s, sys 11.6s, output queue size 464
progress 35% @chr6:79000001, elapsed 25.0s, est remaining 46.5s, peak mem 5814MB, user 721.9s, sys 12.6s, output queue size 625
progress 40% @chr6:31000001, elapsed 29.1s, est remaining 43.7s, peak mem 6226MB, user 832.2s, sys 13.4s, output queue size 786
progress 45% @chr8:31000001, elapsed 33.6s, est remaining 41.0s, peak mem 6361MB, user 989.3s, sys 14.6s, output queue size 204
progress 50% @chr9:37000001, elapsed 37.3s, est remaining 37.3s, peak mem 6423MB, user 1081.9s, sys 15.4s, output queue size 366
progress 55% @chr10:32000001, elapsed 41.6s, est remaining 34.1s, peak mem 6644MB, user 1214.4s, sys 16.7s, output queue size 527
progress 60% @chr12:5000001, elapsed 45.7s, est remaining 30.5s, peak mem 6644MB, user 1354.7s, sys 17.8s, output queue size 510
progress 65% @chr13:23000001, elapsed 50.2s, est remaining 27.0s, peak mem 6644MB, user 1466.8s, sys 18.7s, output queue size 672
progress 70% @chr14:83000001, elapsed 53.2s, est remaining 22.8s, peak mem 6655MB, user 1556.9s, sys 19.5s, output queue size 833
progress 75% @chr16:42000001, elapsed 58.0s, est remaining 19.3s, peak mem 6655MB, user 1700.9s, sys 20.6s, output queue size 995
progress 80% @chr17:78000001, elapsed 64.2s, est remaining 16.1s, peak mem 6655MB, user 1894.0s, sys 22.2s, output queue size 623
progress 85% @chr20:20000001, elapsed 69.2s, est remaining 12.2s, peak mem 6655MB, user 2062.4s, sys 23.2s, output queue size 785
progress 90% @chrX:15000001, elapsed 72.4s, est remaining 8.0s, peak mem 6655MB, user 2154.7s, sys 24.0s, output queue size 947
progress 95% @chrY:54000001, elapsed 74.4s, est remaining 3.9s, peak mem 6655MB, user 2231.6s, sys 24.6s, output queue size 675
progress 100% @chr15:88000001, elapsed 80.8s, est remaining 0.0s, peak mem 6866MB, user 2324.6s, sys 25.5s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 69197258666
reads: 1424902378
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1099.809 user 22.066 sys 1122.893 real
done: 1 calls 0.010 user 0.000 sys 0.012 real
exec_no_coor: 1 calls 0.000 user 0.024 sys 0.052 real
execute: 1 calls 0.002 user 0.001 sys 80.855 real
idle: 216 calls 0.178 user 0.001 sys 185.291 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7200501760 mem 2325.571 user 25.717 sys 82.129 real