This software is licensed to bgold@natera.com by Sentieon Inc. cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/util sort -r Homo_sapiens_assembly38.fasta -t 31 -o 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.bam --sam2bam - This software is licensed to bgold@natera.com by Sentieon Inc. No more license available for sentieon:klib version: sentieon-genomics-202308.03 No more license available for sentieon:klib [M::bwa_idx_load_from_disk] read 3171 ALT contigs No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib No more license available for sentieon:klib [M::main_mem] bwa index loaded in 1553.424 CPU sec, 950.934 real sec [M::process] read 686946 sequences (100000038 bp) in 0.962 CPU sec, 0.966 real sec... [M::process] read 685304 sequences (100000098 bp) in 1.134 CPU sec, 1.172 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 284308, 4, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (147, 183, 348) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 750) [M::mem_pestat] mean and std.dev: (236.18, 146.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 951) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (189, 299, 423) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 891) [M::mem_pestat] mean and std.dev: (318.45, 158.07) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1125) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (299, 415, 854) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1964) [M::mem_pestat] mean and std.dev: (454.00, 290.60) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2519) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 684148 sequences (100000245 bp) in 1.134 CPU sec, 1.149 real sec... [M::process] read 683274 sequences (100000187 bp) in 1.119 CPU sec, 1.120 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 283641, 9, 8) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (242, 314, 658) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1490) [M::mem_pestat] mean and std.dev: (461.94, 302.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1906) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (195, 310, 435) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 915) [M::mem_pestat] mean and std.dev: (328.37, 162.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1155) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_process_seqs] Processed 686946 reads in 138.454 CPU sec, 4.403 real sec [M::mem_process_seqs] Processed 685304 reads in 82.529 CPU sec, 2.629 real sec sorting block 0, #reads = 1081759 mem = 536877221 peak = 617025536 [M::process] read 682904 sequences (100000101 bp) in 1.430 CPU sec, 1.487 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 283597, 3, 25) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (181, 330, 525) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1213) [M::mem_pestat] mean and std.dev: (403.19, 294.10) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1580) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (199, 318, 445) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 937) [M::mem_pestat] mean and std.dev: (334.53, 164.07) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1183) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (122, 280, 519) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1313) [M::mem_pestat] mean and std.dev: (297.55, 189.17) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1710) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 682862 sequences (100000133 bp) in 1.150 CPU sec, 1.150 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 282626, 3, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (193, 381, 594) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1396) [M::mem_pestat] mean and std.dev: (339.42, 151.48) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1797) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 325, 453) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 953) [M::mem_pestat] mean and std.dev: (341.04, 166.51) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1203) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (252, 260, 858) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2070) [M::mem_pestat] mean and std.dev: (473.89, 333.04) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2676) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 282417, 8, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (154, 280, 463) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1081) [M::mem_pestat] mean and std.dev: (332.30, 196.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1390) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 321, 449) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 943) [M::mem_pestat] mean and std.dev: (337.92, 165.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1190) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (191, 282, 878) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2252) [M::mem_pestat] mean and std.dev: (345.87, 319.73) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2939) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 684148 reads in 190.144 CPU sec, 6.112 real sec [M::mem_process_seqs] Processed 682904 reads in 141.408 CPU sec, 4.579 real sec [M::mem_process_seqs] Processed 683274 reads in 153.282 CPU sec, 4.978 real sec sorting block 1, #reads = 1082530 mem = 536882504 peak = 744427520 [M::process] read 683330 sequences (100000113 bp) in 1.598 CPU sec, 1.704 real sec... sorting block 2, #reads = 1080122 mem = 536884376 peak = 810602496 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 282516, 11, 25) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (257, 372, 682) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1532) [M::mem_pestat] mean and std.dev: (512.70, 321.56) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1957) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 321, 450) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 944) [M::mem_pestat] mean and std.dev: (339.34, 165.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1191) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (221, 811, 1501) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 4061) [M::mem_pestat] mean and std.dev: (872.82, 667.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5341) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (243, 339, 640) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1434) [M::mem_pestat] mean and std.dev: (426.42, 310.26) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1831) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 682640 sequences (100000252 bp) in 1.258 CPU sec, 1.331 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (33, 282611, 3, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (211, 324, 473) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 997) [M::mem_pestat] mean and std.dev: (324.48, 138.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1259) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (201, 318, 446) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 936) [M::mem_pestat] mean and std.dev: (335.94, 163.81) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1181) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (273, 321, 507) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 975) [M::mem_pestat] mean and std.dev: (362.07, 189.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1209) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 681916 sequences (100000267 bp) in 1.206 CPU sec, 1.222 real sec... [M::mem_process_seqs] Processed 682862 reads in 137.766 CPU sec, 4.382 real sec [M::mem_process_seqs] Processed 683330 reads in 85.452 CPU sec, 2.705 real sec sorting block 3, #reads = 1080253 mem = 536877447 peak = 810602496 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (27, 282219, 2, 23) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (175, 232, 387) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 811) [M::mem_pestat] mean and std.dev: (277.69, 153.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1023) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 321, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 938) [M::mem_pestat] mean and std.dev: (338.30, 164.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1183) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (190, 273, 469) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1027) [M::mem_pestat] mean and std.dev: (309.57, 189.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1306) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 681854 sequences (100000072 bp) in 1.663 CPU sec, 1.747 real sec... [M::process] read 681418 sequences (100000073 bp) in 1.230 CPU sec, 1.231 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 281659, 5, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (257, 377, 888) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2150) [M::mem_pestat] mean and std.dev: (492.10, 361.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2781) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (207, 326, 450) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 936) [M::mem_pestat] mean and std.dev: (341.40, 163.74) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1179) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (171, 414, 807) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2079) [M::mem_pestat] mean and std.dev: (445.00, 326.09) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2715) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 682640 reads in 136.323 CPU sec, 4.348 real sec [M::mem_process_seqs] Processed 681916 reads in 84.178 CPU sec, 2.686 real sec sorting block 4, #reads = 1079711 mem = 536879582 peak = 834850816 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 282027, 9, 24) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (168, 236, 1025) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2739) [M::mem_pestat] mean and std.dev: (468.42, 464.51) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3596) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (207, 324, 446) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 924) [M::mem_pestat] mean and std.dev: (339.28, 162.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1163) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (190, 282, 454) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 982) [M::mem_pestat] mean and std.dev: (279.45, 138.35) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1246) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 681154 sequences (100000067 bp) in 1.733 CPU sec, 1.814 real sec... [M::process] read 686118 sequences (100000126 bp) in 1.250 CPU sec, 1.260 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 281487, 4, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (161, 162, 711) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1811) [M::mem_pestat] mean and std.dev: (357.24, 273.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2361) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (209, 327, 449) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 929) [M::mem_pestat] mean and std.dev: (341.88, 163.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1169) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (177, 237, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 999) [M::mem_pestat] mean and std.dev: (289.38, 131.07) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1273) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 681854 reads in 135.831 CPU sec, 4.336 real sec [M::mem_process_seqs] Processed 681418 reads in 84.125 CPU sec, 2.676 real sec sorting block 5, #reads = 1079011 mem = 536876428 peak = 834850816 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 282092, 5, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (194, 375, 578) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1346) [M::mem_pestat] mean and std.dev: (386.67, 220.80) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1730) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (211, 332, 457) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 949) [M::mem_pestat] mean and std.dev: (346.84, 166.40) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1195) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (211, 285, 1121) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2941) [M::mem_pestat] mean and std.dev: (631.62, 507.34) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3851) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 685028 sequences (100000265 bp) in 1.884 CPU sec, 1.971 real sec... [M::process] read 683816 sequences (100000195 bp) in 1.280 CPU sec, 1.275 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 283752, 8, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (177, 322, 460) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1026) [M::mem_pestat] mean and std.dev: (356.77, 235.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1309) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (191, 306, 432) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 914) [M::mem_pestat] mean and std.dev: (325.03, 162.26) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1155) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (230, 339, 456) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 908) [M::mem_pestat] mean and std.dev: (357.70, 195.46) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1140) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 681154 reads in 134.681 CPU sec, 4.296 real sec sorting block 6, #reads = 1079681 mem = 536883521 peak = 834850816 [M::mem_process_seqs] Processed 686118 reads in 83.394 CPU sec, 2.656 real sec sorting block 7, #reads = 1080677 mem = 536880202 peak = 935985152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 283855, 2, 22) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (179, 307, 327) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 623) [M::mem_pestat] mean and std.dev: (278.21, 113.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 771) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (196, 314, 442) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 934) [M::mem_pestat] mean and std.dev: (332.63, 165.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1180) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (187, 479, 520) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1186) [M::mem_pestat] mean and std.dev: (407.82, 210.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1519) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683354 sequences (100000163 bp) in 1.827 CPU sec, 1.964 real sec... [M::process] read 682766 sequences (100000150 bp) in 1.320 CPU sec, 1.316 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 282620, 13, 23) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (248, 302, 350) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (44, 554) [M::mem_pestat] mean and std.dev: (299.67, 91.90) [M::mem_pestat] low and high boundaries for proper pairs: (1, 667) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (200, 321, 450) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 950) [M::mem_pestat] mean and std.dev: (338.08, 166.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1200) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (226, 421, 1053) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2707) [M::mem_pestat] mean and std.dev: (445.00, 309.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3534) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (166, 214, 379) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 805) [M::mem_pestat] mean and std.dev: (288.09, 132.09) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1018) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 685028 reads in 134.381 CPU sec, 4.301 real sec [M::mem_process_seqs] Processed 683816 reads in 83.869 CPU sec, 2.670 real sec sorting block 8, #reads = 1082919 mem = 536878956 peak = 935985152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 282745, 3, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (172, 394, 720) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1816) [M::mem_pestat] mean and std.dev: (538.37, 443.41) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2364) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 324, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 949) [M::mem_pestat] mean and std.dev: (339.67, 166.25) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1198) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (207, 254, 444) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 918) [M::mem_pestat] mean and std.dev: (298.86, 135.53) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1155) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683068 sequences (100000152 bp) in 2.012 CPU sec, 2.129 real sec... [M::process] read 683262 sequences (100000284 bp) in 1.330 CPU sec, 1.324 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (7, 282317, 1, 19) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (204, 326, 457) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 963) [M::mem_pestat] mean and std.dev: (343.43, 168.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1216) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (227, 320, 430) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 836) [M::mem_pestat] mean and std.dev: (322.63, 157.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1039) [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 683354 reads in 134.939 CPU sec, 4.300 real sec sorting block 9, #reads = 1081528 mem = 536879269 peak = 935985152 [M::process] read 683058 sequences (100000194 bp) in 1.437 CPU sec, 1.446 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 282618, 8, 8) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (142, 236, 294) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 598) [M::mem_pestat] mean and std.dev: (226.13, 92.74) [M::mem_pestat] low and high boundaries for proper pairs: (1, 750) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 323, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 952) [M::mem_pestat] mean and std.dev: (340.04, 167.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1202) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_process_seqs] Processed 683068 reads in 78.865 CPU sec, 2.699 real sec [M::mem_process_seqs] Processed 682766 reads in 181.136 CPU sec, 5.960 real sec sorting block 10, #reads = 1081785 mem = 536876628 peak = 935985152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 282531, 5, 30) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (560, 617, 849) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1427) [M::mem_pestat] mean and std.dev: (632.56, 170.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1716) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (201, 320, 450) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 948) [M::mem_pestat] mean and std.dev: (338.33, 166.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1197) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (210, 351, 2677) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 7611) [M::mem_pestat] mean and std.dev: (1354.90, 1597.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 10078) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 682766 sequences (100000198 bp) in 2.044 CPU sec, 2.156 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 282251, 0, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (317, 348, 465) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (21, 761) [M::mem_pestat] mean and std.dev: (341.73, 148.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 934) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 321, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 940) [M::mem_pestat] mean and std.dev: (338.25, 165.28) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1186) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (134, 260, 325) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 707) [M::mem_pestat] mean and std.dev: (227.93, 102.10) [M::mem_pestat] low and high boundaries for proper pairs: (1, 898) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 682250 sequences (100000162 bp) in 1.330 CPU sec, 1.324 real sec... [M::mem_process_seqs] Processed 683262 reads in 149.956 CPU sec, 4.778 real sec [M::mem_process_seqs] Processed 683058 reads in 87.008 CPU sec, 2.762 real sec sorting block 11, #reads = 1080979 mem = 536878549 peak = 935985152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 282582, 2, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (163, 238, 319) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 631) [M::mem_pestat] mean and std.dev: (235.74, 123.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 787) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 322, 450) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 944) [M::mem_pestat] mean and std.dev: (339.74, 166.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1191) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (189, 217, 471) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1035) [M::mem_pestat] mean and std.dev: (348.95, 249.27) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1346) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 681812 sequences (100000285 bp) in 1.862 CPU sec, 1.974 real sec... [M::process] read 681338 sequences (100000043 bp) in 1.350 CPU sec, 1.350 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (15, 282825, 4, 28) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (152, 713, 734) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1898) [M::mem_pestat] mean and std.dev: (413.92, 295.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2480) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (206, 326, 455) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 953) [M::mem_pestat] mean and std.dev: (343.06, 166.98) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1202) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (198, 539, 702) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1710) [M::mem_pestat] mean and std.dev: (487.44, 335.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2214) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 682766 reads in 139.762 CPU sec, 4.470 real sec [M::mem_process_seqs] Processed 682250 reads in 85.647 CPU sec, 2.729 real sec sorting block 12, #reads = 1080397 mem = 536881126 peak = 935985152 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 282245, 5, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (189, 238, 680) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1662) [M::mem_pestat] mean and std.dev: (357.67, 302.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2153) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (207, 327, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 942) [M::mem_pestat] mean and std.dev: (342.53, 165.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1187) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (140, 214, 314) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 662) [M::mem_pestat] mean and std.dev: (217.75, 101.94) [M::mem_pestat] low and high boundaries for proper pairs: (1, 836) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 686404 sequences (100000025 bp) in 2.425 CPU sec, 2.569 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 283103, 4, 23) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (156, 177, 672) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1704) [M::mem_pestat] mean and std.dev: (242.36, 166.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2220) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (209, 332, 461) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 965) [M::mem_pestat] mean and std.dev: (348.63, 169.38) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1217) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (240, 457, 610) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1350) [M::mem_pestat] mean and std.dev: (396.14, 203.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1720) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 681812 reads in 131.570 CPU sec, 4.185 real sec sorting block 13, #reads = 1080049 mem = 536880468 peak = 935985152 [M::process] read 685102 sequences (100000196 bp) in 1.419 CPU sec, 1.428 real sec... [M::mem_process_seqs] Processed 681338 reads in 81.778 CPU sec, 2.581 real sec sorting block 14, #reads = 1078857 mem = 536878749 peak = 949612544 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 283882, 4, 30) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (181, 310, 544) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1270) [M::mem_pestat] mean and std.dev: (305.17, 149.71) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1633) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (191, 303, 427) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 899) [M::mem_pestat] mean and std.dev: (321.65, 158.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1135) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (215, 232, 309) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (27, 497) [M::mem_pestat] mean and std.dev: (265.34, 78.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 591) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683948 sequences (100000139 bp) in 1.837 CPU sec, 1.944 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 283334, 13, 20) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (249, 251, 316) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (115, 450) [M::mem_pestat] mean and std.dev: (261.24, 64.49) [M::mem_pestat] low and high boundaries for proper pairs: (3, 519) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::process] read 683228 sequences (100000296 bp) in 1.360 CPU sec, 1.365 real sec... [M::mem_pestat] (25, 50, 75) percentile: (196, 311, 434) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 910) [M::mem_pestat] mean and std.dev: (327.59, 160.22) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1148) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (55, 605, 1361) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3973) [M::mem_pestat] mean and std.dev: (737.46, 637.81) [M::mem_pestat] low and high boundaries for proper pairs: (1, 5279) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (216, 318, 570) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1278) [M::mem_pestat] mean and std.dev: (316.11, 186.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1632) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 686404 reads in 136.078 CPU sec, 4.341 real sec [M::mem_process_seqs] Processed 685102 reads in 85.657 CPU sec, 2.715 real sec sorting block 15, #reads = 1080612 mem = 536878857 peak = 949612544 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 282956, 12, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (230, 256, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 884) [M::mem_pestat] mean and std.dev: (326.36, 171.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1102) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (199, 317, 440) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 922) [M::mem_pestat] mean and std.dev: (332.43, 160.92) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1163) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (181, 631, 854) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2200) [M::mem_pestat] mean and std.dev: (510.73, 290.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2873) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (249, 387, 645) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1437) [M::mem_pestat] mean and std.dev: (420.58, 209.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1833) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 682784 sequences (100000166 bp) in 2.222 CPU sec, 2.348 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 282734, 17, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (130, 362, 545) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1375) [M::mem_pestat] mean and std.dev: (326.00, 261.98) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1790) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 322, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 940) [M::mem_pestat] mean and std.dev: (337.08, 162.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1186) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (609, 609, 1315) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2727) [M::mem_pestat] mean and std.dev: (761.86, 434.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3433) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (150, 238, 346) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 738) [M::mem_pestat] mean and std.dev: (209.56, 81.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 934) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 682662 sequences (100000103 bp) in 1.390 CPU sec, 1.390 real sec... [M::mem_process_seqs] Processed 683948 reads in 135.356 CPU sec, 4.304 real sec [M::mem_process_seqs] Processed 683228 reads in 84.799 CPU sec, 2.687 real sec sorting block 16, #reads = 1080970 mem = 536878089 peak = 949612544 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 282518, 1, 9) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (134, 173, 331) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 725) [M::mem_pestat] mean and std.dev: (214.58, 114.37) [M::mem_pestat] low and high boundaries for proper pairs: (1, 922) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (205, 326, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 946) [M::mem_pestat] mean and std.dev: (340.84, 164.67) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1193) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::process] read 682906 sequences (100000071 bp) in 2.065 CPU sec, 2.233 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 282392, 2, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (320, 412, 1413) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3599) [M::mem_pestat] mean and std.dev: (665.88, 497.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4692) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (204, 325, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 945) [M::mem_pestat] mean and std.dev: (340.42, 164.75) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1192) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (229, 271, 511) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1075) [M::mem_pestat] mean and std.dev: (296.53, 134.29) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1357) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 682706 sequences (100000221 bp) in 1.350 CPU sec, 1.351 real sec... [M::mem_process_seqs] Processed 682784 reads in 138.098 CPU sec, 4.407 real sec sorting block 17, #reads = 1079897 mem = 536878379 peak = 949612544 [M::mem_process_seqs] Processed 682662 reads in 86.970 CPU sec, 2.761 real sec sorting block 18, #reads = 1079962 mem = 536879649 peak = 949612544 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 282553, 8, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (174, 250, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1005) [M::mem_pestat] mean and std.dev: (346.04, 209.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1282) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 321, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 935) [M::mem_pestat] mean and std.dev: (337.64, 163.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1179) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (218, 275, 493) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1043) [M::mem_pestat] mean and std.dev: (327.81, 194.25) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1318) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 682362 sequences (100000238 bp) in 2.154 CPU sec, 2.268 real sec... [M::process] read 682030 sequences (100000080 bp) in 1.370 CPU sec, 1.371 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 282012, 6, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (172, 281, 457) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1027) [M::mem_pestat] mean and std.dev: (341.30, 206.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1312) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 321, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 938) [M::mem_pestat] mean and std.dev: (337.79, 163.97) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1183) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (186, 287, 360) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 708) [M::mem_pestat] mean and std.dev: (261.20, 124.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 882) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 682906 reads in 139.662 CPU sec, 4.446 real sec [M::mem_process_seqs] Processed 682706 reads in 87.346 CPU sec, 2.775 real sec sorting block 19, #reads = 1079372 mem = 536879978 peak = 949612544 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 282401, 3, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (210, 374, 512) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1116) [M::mem_pestat] mean and std.dev: (380.83, 227.64) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1418) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (205, 324, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 943) [M::mem_pestat] mean and std.dev: (340.53, 164.98) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1189) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (224, 301, 480) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 992) [M::mem_pestat] mean and std.dev: (310.62, 111.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1248) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 681352 sequences (100000249 bp) in 1.965 CPU sec, 2.099 real sec... [M::process] read 682014 sequences (100000051 bp) in 1.360 CPU sec, 1.355 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 282069, 2, 8) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (177, 278, 498) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1140) [M::mem_pestat] mean and std.dev: (310.50, 148.18) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1461) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (206, 327, 455) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 953) [M::mem_pestat] mean and std.dev: (343.45, 166.46) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1202) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::mem_process_seqs] Processed 682362 reads in 141.067 CPU sec, 4.502 real sec [M::mem_process_seqs] Processed 682030 reads in 87.193 CPU sec, 2.773 real sec sorting block 20, #reads = 1080324 mem = 536876937 peak = 949612544 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (32, 281148, 5, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (196, 315, 556) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1276) [M::mem_pestat] mean and std.dev: (399.61, 249.91) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1636) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (209, 331, 458) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 956) [M::mem_pestat] mean and std.dev: (346.91, 167.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1205) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (182, 211, 516) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1184) [M::mem_pestat] mean and std.dev: (321.20, 228.46) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1518) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 686454 sequences (100000287 bp) in 2.256 CPU sec, 2.384 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 282397, 8, 28) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (146, 469, 493) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1187) [M::mem_pestat] mean and std.dev: (409.61, 283.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1542) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (207, 327, 454) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 948) [M::mem_pestat] mean and std.dev: (343.64, 166.46) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1195) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (245, 346, 615) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1355) [M::mem_pestat] mean and std.dev: (341.00, 168.71) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1725) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 685030 sequences (100000122 bp) in 1.360 CPU sec, 1.358 real sec... [M::mem_process_seqs] Processed 681352 reads in 140.474 CPU sec, 4.482 real sec [M::mem_process_seqs] Processed 682014 reads in 87.247 CPU sec, 2.782 real sec sorting block 21, #reads = 1079784 mem = 536881085 peak = 949612544 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (13, 283866, 2, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (141, 373, 373) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 837) [M::mem_pestat] mean and std.dev: (290.92, 135.36) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1069) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (191, 305, 435) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 923) [M::mem_pestat] mean and std.dev: (326.39, 164.56) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1167) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (226, 348, 536) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1156) [M::mem_pestat] mean and std.dev: (366.92, 204.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1466) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 684392 sequences (100000221 bp) in 1.933 CPU sec, 2.041 real sec... [M::process] read 683950 sequences (100000064 bp) in 1.350 CPU sec, 1.349 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (9, 282730, 5, 27) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (195, 313, 443) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 939) [M::mem_pestat] mean and std.dev: (332.13, 165.43) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1187) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (158, 246, 524) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1256) [M::mem_pestat] mean and std.dev: (362.60, 330.94) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1686) [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 686454 reads in 144.971 CPU sec, 4.645 real sec sorting block 22, #reads = 1079525 mem = 536878765 peak = 949612544 [M::mem_process_seqs] Processed 685030 reads in 90.672 CPU sec, 2.890 real sec sorting block 23, #reads = 1083580 mem = 536882165 peak = 991727616 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 283148, 3, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (137, 223, 366) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 824) [M::mem_pestat] mean and std.dev: (255.11, 126.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1053) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (198, 317, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 945) [M::mem_pestat] mean and std.dev: (335.56, 165.85) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1194) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (172, 239, 360) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 736) [M::mem_pestat] mean and std.dev: (280.85, 156.39) [M::mem_pestat] low and high boundaries for proper pairs: (1, 924) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683262 sequences (100000201 bp) in 2.266 CPU sec, 2.374 real sec... [M::process] read 682790 sequences (100000171 bp) in 1.360 CPU sec, 1.358 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 282703, 4, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (154, 235, 327) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 673) [M::mem_pestat] mean and std.dev: (252.40, 105.23) [M::mem_pestat] low and high boundaries for proper pairs: (1, 846) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (199, 318, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 943) [M::mem_pestat] mean and std.dev: (336.12, 165.18) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1191) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (210, 228, 278) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (74, 414) [M::mem_pestat] mean and std.dev: (219.00, 49.46) [M::mem_pestat] low and high boundaries for proper pairs: (6, 482) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 684392 reads in 144.411 CPU sec, 4.610 real sec [M::mem_process_seqs] Processed 683950 reads in 86.630 CPU sec, 2.755 real sec sorting block 24, #reads = 1082833 mem = 536879647 peak = 991727616 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 282335, 1, 27) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (293, 356, 665) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1409) [M::mem_pestat] mean and std.dev: (461.09, 350.13) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1862) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 323, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 949) [M::mem_pestat] mean and std.dev: (339.41, 165.74) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1198) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (199, 340, 606) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1420) [M::mem_pestat] mean and std.dev: (394.88, 248.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1827) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 682860 sequences (100000091 bp) in 2.009 CPU sec, 2.146 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 281895, 6, 7) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (259, 474, 494) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 964) [M::mem_pestat] mean and std.dev: (390.89, 161.25) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1199) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 324, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 950) [M::mem_pestat] mean and std.dev: (339.65, 164.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1199) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::process] read 682650 sequences (100000150 bp) in 1.320 CPU sec, 1.320 real sec... [M::mem_process_seqs] Processed 683262 reads in 138.909 CPU sec, 4.432 real sec [M::mem_process_seqs] Processed 682790 reads in 87.429 CPU sec, 2.766 real sec sorting block 25, #reads = 1081684 mem = 536879589 peak = 991727616 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (29, 281687, 10, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (193, 381, 563) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1303) [M::mem_pestat] mean and std.dev: (393.07, 256.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1673) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 321, 450) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 946) [M::mem_pestat] mean and std.dev: (337.98, 164.15) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1194) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (825, 1734, 1734) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3552) [M::mem_pestat] mean and std.dev: (1362.30, 605.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4461) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (192, 301, 445) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 951) [M::mem_pestat] mean and std.dev: (314.10, 159.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1204) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 682594 sequences (100000132 bp) in 1.972 CPU sec, 2.059 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 281836, 3, 23) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (137, 233, 292) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 602) [M::mem_pestat] mean and std.dev: (228.62, 105.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 757) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 321, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 940) [M::mem_pestat] mean and std.dev: (337.59, 163.42) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1186) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (180, 231, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 981) [M::mem_pestat] mean and std.dev: (303.91, 142.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1248) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 681874 sequences (100000066 bp) in 1.630 CPU sec, 1.622 real sec... [M::mem_process_seqs] Processed 682860 reads in 141.823 CPU sec, 4.518 real sec [M::mem_process_seqs] Processed 682650 reads in 90.775 CPU sec, 2.873 real sec sorting block 26, #reads = 1079919 mem = 536877826 peak = 991727616 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 282524, 5, 29) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (253, 363, 691) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1567) [M::mem_pestat] mean and std.dev: (484.65, 363.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2005) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 322, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 938) [M::mem_pestat] mean and std.dev: (337.88, 163.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1183) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (254, 391, 761) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1775) [M::mem_pestat] mean and std.dev: (498.21, 336.80) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2282) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 681318 sequences (100000237 bp) in 2.068 CPU sec, 2.206 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 282095, 4, 28) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (154, 181, 503) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1201) [M::mem_pestat] mean and std.dev: (413.57, 367.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1885) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (206, 323, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 929) [M::mem_pestat] mean and std.dev: (338.65, 161.82) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1170) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (275, 368, 517) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1001) [M::mem_pestat] mean and std.dev: (346.08, 141.88) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1243) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 684504 sequences (100000169 bp) in 1.400 CPU sec, 1.407 real sec... [M::mem_process_seqs] Processed 682594 reads in 146.757 CPU sec, 4.688 real sec sorting block 27, #reads = 1079313 mem = 536882401 peak = 991727616 [M::mem_process_seqs] Processed 681874 reads in 90.350 CPU sec, 2.860 real sec sorting block 28, #reads = 1079287 mem = 536879060 peak = 1030283264 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 282307, 1, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (178, 397, 600) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1444) [M::mem_pestat] mean and std.dev: (426.24, 311.29) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1866) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (209, 328, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 938) [M::mem_pestat] mean and std.dev: (342.86, 163.45) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1181) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (190, 383, 539) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1237) [M::mem_pestat] mean and std.dev: (377.33, 165.68) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1586) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 688874 sequences (100000038 bp) in 2.443 CPU sec, 2.571 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 283377, 4, 25) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (172, 350, 361) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 739) [M::mem_pestat] mean and std.dev: (251.29, 133.44) [M::mem_pestat] low and high boundaries for proper pairs: (1, 928) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (197, 316, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 947) [M::mem_pestat] mean and std.dev: (335.02, 166.91) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1197) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (202, 233, 582) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1342) [M::mem_pestat] mean and std.dev: (357.92, 274.53) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1722) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 687004 sequences (100000009 bp) in 1.450 CPU sec, 1.458 real sec... [M::mem_process_seqs] Processed 681318 reads in 142.067 CPU sec, 4.512 real sec [M::mem_process_seqs] Processed 684504 reads in 90.721 CPU sec, 2.876 real sec sorting block 29, #reads = 1079249 mem = 536877648 peak = 1030283264 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 285194, 8, 11) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (206, 245, 530) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1178) [M::mem_pestat] mean and std.dev: (341.96, 249.24) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1502) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (182, 290, 427) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 917) [M::mem_pestat] mean and std.dev: (317.59, 164.49) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1162) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (178, 281, 505) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1159) [M::mem_pestat] mean and std.dev: (334.55, 164.05) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1486) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 685860 sequences (100000273 bp) in 2.536 CPU sec, 2.688 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 283963, 5, 24) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (189, 294, 1228) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3306) [M::mem_pestat] mean and std.dev: (720.91, 657.44) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4345) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (189, 303, 438) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 936) [M::mem_pestat] mean and std.dev: (325.88, 165.11) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1185) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (232, 384, 855) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2101) [M::mem_pestat] mean and std.dev: (460.21, 293.21) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2724) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 688874 reads in 146.740 CPU sec, 4.672 real sec [M::mem_process_seqs] Processed 687004 reads in 92.440 CPU sec, 2.914 real sec [M::process] read 684724 sequences (100000062 bp) in 1.915 CPU sec, 1.961 real sec... sorting block 30, #reads = 1081371 mem = 536878771 peak = 1030283264 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 284209, 1, 14) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (159, 242, 406) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 900) [M::mem_pestat] mean and std.dev: (279.44, 144.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1147) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (192, 311, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 957) [M::mem_pestat] mean and std.dev: (332.05, 167.64) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1212) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (211, 430, 639) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1495) [M::mem_pestat] mean and std.dev: (380.25, 219.41) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1923) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683962 sequences (100000270 bp) in 2.620 CPU sec, 2.786 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 283055, 9, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (194, 244, 415) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 857) [M::mem_pestat] mean and std.dev: (279.00, 155.04) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1078) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (197, 318, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 962) [M::mem_pestat] mean and std.dev: (336.72, 167.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1217) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (235, 441, 453) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 889) [M::mem_pestat] mean and std.dev: (368.56, 191.41) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1134) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 685860 reads in 151.168 CPU sec, 4.826 real sec [M::mem_process_seqs] Processed 684724 reads in 94.268 CPU sec, 2.977 real sec sorting block 31, #reads = 1080578 mem = 536880250 peak = 1030283264 [M::process] read 683310 sequences (100000126 bp) in 2.329 CPU sec, 2.437 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 283288, 3, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (256, 278, 727) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1669) [M::mem_pestat] mean and std.dev: (495.00, 401.24) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2140) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (200, 322, 457) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 971) [M::mem_pestat] mean and std.dev: (340.43, 168.71) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1228) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (175, 303, 668) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1654) [M::mem_pestat] mean and std.dev: (261.47, 137.28) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2147) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR sorting block 32, #reads = 1080366 mem = 536879656 peak = 1030283264 [M::process] read 683538 sequences (100000130 bp) in 2.514 CPU sec, 2.687 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 282570, 3, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (180, 333, 735) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1845) [M::mem_pestat] mean and std.dev: (429.05, 339.14) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2400) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (201, 323, 455) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 963) [M::mem_pestat] mean and std.dev: (340.34, 166.93) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1217) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (229, 321, 391) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 715) [M::mem_pestat] mean and std.dev: (298.65, 92.36) [M::mem_pestat] low and high boundaries for proper pairs: (1, 877) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 683962 reads in 153.096 CPU sec, 4.907 real sec [M::mem_process_seqs] Processed 683310 reads in 97.106 CPU sec, 3.072 real sec [M::process] read 683168 sequences (100000278 bp) in 2.514 CPU sec, 2.665 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 283022, 5, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (161, 297, 482) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1124) [M::mem_pestat] mean and std.dev: (343.22, 171.07) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1445) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (201, 322, 454) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 960) [M::mem_pestat] mean and std.dev: (339.56, 166.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1213) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (297, 558, 927) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2187) [M::mem_pestat] mean and std.dev: (585.06, 379.20) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2817) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR sorting block 33, #reads = 1078705 mem = 536881231 peak = 1030283264 [M::process] read 682926 sequences (100000054 bp) in 2.381 CPU sec, 2.541 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 282891, 8, 20) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (171, 268, 1150) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3108) [M::mem_pestat] mean and std.dev: (451.10, 406.12) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4087) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 323, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 952) [M::mem_pestat] mean and std.dev: (339.26, 165.18) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1202) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (200, 325, 395) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 785) [M::mem_pestat] mean and std.dev: (280.50, 81.98) [M::mem_pestat] low and high boundaries for proper pairs: (1, 980) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 683538 reads in 153.902 CPU sec, 4.920 real sec [M::mem_process_seqs] Processed 683168 reads in 97.450 CPU sec, 3.081 real sec [M::process] read 682790 sequences (100000271 bp) in 1.901 CPU sec, 2.027 real sec... sorting block 34, #reads = 1078021 mem = 536878317 peak = 1030283264 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (8, 282891, 3, 19) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 320, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 938) [M::mem_pestat] mean and std.dev: (337.28, 163.25) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1183) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (256, 279, 626) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1366) [M::mem_pestat] mean and std.dev: (387.47, 258.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1736) [M::mem_pestat] skip orientation RR [M::process] read 684174 sequences (100000199 bp) in 2.009 CPU sec, 2.151 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (12, 282781, 3, 27) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (209, 442, 998) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2576) [M::mem_pestat] mean and std.dev: (556.50, 436.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3365) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 322, 449) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 941) [M::mem_pestat] mean and std.dev: (338.11, 163.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1187) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (198, 303, 520) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1164) [M::mem_pestat] mean and std.dev: (311.58, 192.15) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1486) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 690480 sequences (100000165 bp) in 1.390 CPU sec, 1.394 real sec... [M::mem_process_seqs] Processed 682926 reads in 151.962 CPU sec, 4.849 real sec [M::mem_process_seqs] Processed 682790 reads in 95.253 CPU sec, 3.017 real sec sorting block 35, #reads = 1076901 mem = 536878192 peak = 1030283264 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 283406, 5, 20) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (223, 432, 618) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1408) [M::mem_pestat] mean and std.dev: (387.26, 181.91) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1803) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (197, 314, 447) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 947) [M::mem_pestat] mean and std.dev: (334.79, 166.97) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1197) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (160, 279, 643) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1609) [M::mem_pestat] mean and std.dev: (406.63, 353.32) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2092) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 688436 sequences (100000078 bp) in 2.531 CPU sec, 2.706 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 286144, 4, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (245, 302, 417) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 761) [M::mem_pestat] mean and std.dev: (328.67, 124.97) [M::mem_pestat] low and high boundaries for proper pairs: (1, 933) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (178, 280, 411) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 877) [M::mem_pestat] mean and std.dev: (307.11, 157.46) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1110) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (164, 337, 800) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2072) [M::mem_pestat] mean and std.dev: (384.47, 256.78) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2708) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 687892 sequences (100000261 bp) in 1.500 CPU sec, 1.500 real sec... [M::mem_process_seqs] Processed 684174 reads in 153.542 CPU sec, 4.880 real sec sorting block 36, #reads = 1076293 mem = 536883820 peak = 1030283264 [M::mem_process_seqs] Processed 690480 reads in 96.734 CPU sec, 3.068 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 285237, 0, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (124, 302, 414) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 994) [M::mem_pestat] mean and std.dev: (267.11, 188.94) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1284) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (184, 293, 424) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 904) [M::mem_pestat] mean and std.dev: (316.42, 160.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1144) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (312, 352, 440) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (56, 696) [M::mem_pestat] mean and std.dev: (352.06, 116.01) [M::mem_pestat] low and high boundaries for proper pairs: (1, 824) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR sorting block 37, #reads = 1077918 mem = 536877766 peak = 1030283264 [M::process] read 686276 sequences (100000168 bp) in 2.126 CPU sec, 2.285 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 285314, 5, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (153, 222, 454) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1056) [M::mem_pestat] mean and std.dev: (274.20, 156.40) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1357) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (186, 296, 428) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 912) [M::mem_pestat] mean and std.dev: (319.06, 160.84) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1154) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (185, 278, 453) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 989) [M::mem_pestat] mean and std.dev: (339.00, 196.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1257) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 685298 sequences (100000262 bp) in 1.450 CPU sec, 1.451 real sec... [M::mem_process_seqs] Processed 688436 reads in 152.346 CPU sec, 4.863 real sec [M::mem_process_seqs] Processed 687892 reads in 96.857 CPU sec, 3.069 real sec sorting block 38, #reads = 1078783 mem = 536880317 peak = 1030283264 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 284269, 9, 29) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (172, 210, 255) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (6, 421) [M::mem_pestat] mean and std.dev: (208.88, 60.23) [M::mem_pestat] low and high boundaries for proper pairs: (1, 504) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (191, 306, 438) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 932) [M::mem_pestat] mean and std.dev: (326.37, 162.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1179) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (187, 279, 518) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1180) [M::mem_pestat] mean and std.dev: (323.21, 164.97) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1511) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 684260 sequences (100000196 bp) in 2.455 CPU sec, 2.636 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 284090, 4, 5) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (188, 249, 318) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 578) [M::mem_pestat] mean and std.dev: (248.50, 69.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 708) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (195, 314, 446) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 948) [M::mem_pestat] mean and std.dev: (332.95, 165.74) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1199) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_pestat] skip orientation FF [M::process] read 683642 sequences (100000031 bp) in 1.430 CPU sec, 1.432 real sec... [M::mem_process_seqs] Processed 686276 reads in 148.099 CPU sec, 4.711 real sec [M::mem_process_seqs] Processed 685298 reads in 93.233 CPU sec, 2.956 real sec sorting block 39, #reads = 1078195 mem = 536880450 peak = 1030283264 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 283869, 5, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (158, 285, 607) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1505) [M::mem_pestat] mean and std.dev: (322.88, 317.03) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1954) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (198, 319, 453) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 963) [M::mem_pestat] mean and std.dev: (337.61, 167.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1218) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (157, 235, 524) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1258) [M::mem_pestat] mean and std.dev: (294.76, 225.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1625) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683032 sequences (100000090 bp) in 2.146 CPU sec, 2.317 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (25, 283568, 10, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (223, 299, 1082) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2800) [M::mem_pestat] mean and std.dev: (613.08, 521.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3659) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (200, 321, 455) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 965) [M::mem_pestat] mean and std.dev: (339.82, 167.97) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1220) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (307, 1386, 1386) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 3544) [M::mem_pestat] mean and std.dev: (1010.56, 613.41) [M::mem_pestat] low and high boundaries for proper pairs: (1, 4623) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (205, 368, 425) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 865) [M::mem_pestat] mean and std.dev: (310.75, 115.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1085) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::process] read 682826 sequences (100000299 bp) in 1.410 CPU sec, 1.410 real sec... [M::mem_process_seqs] Processed 684260 reads in 150.086 CPU sec, 4.786 real sec sorting block 40, #reads = 1077771 mem = 536880333 peak = 1030283264 [M::mem_process_seqs] Processed 683642 reads in 94.312 CPU sec, 2.996 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (26, 283180, 7, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (210, 277, 402) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 786) [M::mem_pestat] mean and std.dev: (293.62, 141.34) [M::mem_pestat] low and high boundaries for proper pairs: (1, 978) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 324, 458) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 970) [M::mem_pestat] mean and std.dev: (342.32, 168.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1226) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (270, 349, 697) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1551) [M::mem_pestat] mean and std.dev: (447.50, 258.40) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1978) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR sorting block 41, #reads = 1077787 mem = 536879941 peak = 1050890240 [M::process] read 682572 sequences (100000217 bp) in 2.342 CPU sec, 2.471 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (30, 282605, 1, 15) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (201, 446, 490) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1068) [M::mem_pestat] mean and std.dev: (390.89, 196.93) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1357) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 325, 460) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 976) [M::mem_pestat] mean and std.dev: (344.80, 171.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1234) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (445, 466, 510) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (315, 640) [M::mem_pestat] mean and std.dev: (476.22, 24.33) [M::mem_pestat] low and high boundaries for proper pairs: (250, 705) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 687826 sequences (100000082 bp) in 1.450 CPU sec, 1.448 real sec... [M::mem_process_seqs] Processed 683032 reads in 145.652 CPU sec, 4.629 real sec [M::mem_process_seqs] Processed 682826 reads in 91.535 CPU sec, 2.904 real sec sorting block 42, #reads = 1076984 mem = 536876470 peak = 1050890240 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (32, 283184, 5, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (145, 267, 550) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1360) [M::mem_pestat] mean and std.dev: (322.42, 217.83) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1765) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (204, 330, 471) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1005) [M::mem_pestat] mean and std.dev: (351.14, 176.98) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1272) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (169, 197, 241) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (25, 385) [M::mem_pestat] mean and std.dev: (197.30, 56.54) [M::mem_pestat] low and high boundaries for proper pairs: (1, 457) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 687170 sequences (100000166 bp) in 2.014 CPU sec, 2.137 real sec... [M::process] read 686634 sequences (100000201 bp) in 1.390 CPU sec, 1.387 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (10, 284249, 6, 13) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (165, 468, 468) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1074) [M::mem_pestat] mean and std.dev: (391.90, 215.19) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1377) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (185, 296, 432) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 926) [M::mem_pestat] mean and std.dev: (321.34, 165.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1173) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (212, 243, 526) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1154) [M::mem_pestat] mean and std.dev: (346.62, 187.51) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1468) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 682572 reads in 152.755 CPU sec, 4.880 real sec [M::mem_process_seqs] Processed 687826 reads in 98.693 CPU sec, 3.137 real sec sorting block 43, #reads = 1074716 mem = 536878312 peak = 1050890240 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (16, 284256, 3, 25) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (147, 182, 392) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 882) [M::mem_pestat] mean and std.dev: (218.73, 105.50) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1127) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (187, 298, 427) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 907) [M::mem_pestat] mean and std.dev: (319.46, 160.19) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1147) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (180, 246, 414) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 882) [M::mem_pestat] mean and std.dev: (240.32, 103.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1116) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 685826 sequences (100000245 bp) in 2.476 CPU sec, 2.623 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (11, 284066, 5, 16) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (194, 218, 334) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 614) [M::mem_pestat] mean and std.dev: (249.82, 135.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 793) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (190, 304, 434) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 922) [M::mem_pestat] mean and std.dev: (324.15, 161.59) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1166) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (228, 412, 854) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2106) [M::mem_pestat] mean and std.dev: (493.56, 392.67) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2732) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 685266 sequences (100000289 bp) in 1.410 CPU sec, 1.412 real sec... [M::mem_process_seqs] Processed 687170 reads in 144.416 CPU sec, 4.591 real sec [M::mem_process_seqs] Processed 686634 reads in 91.363 CPU sec, 2.896 real sec sorting block 44, #reads = 1078678 mem = 536877662 peak = 1050890240 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 283631, 3, 17) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (200, 367, 443) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 929) [M::mem_pestat] mean and std.dev: (317.67, 130.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1172) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (193, 311, 444) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 946) [M::mem_pestat] mean and std.dev: (330.57, 164.87) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1197) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (167, 272, 517) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1217) [M::mem_pestat] mean and std.dev: (332.18, 237.57) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1567) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 684606 sequences (100000062 bp) in 2.075 CPU sec, 2.189 real sec... [M::process] read 683726 sequences (100000120 bp) in 1.390 CPU sec, 1.392 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (18, 283693, 7, 27) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (164, 192, 322) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 638) [M::mem_pestat] mean and std.dev: (214.00, 77.01) [M::mem_pestat] low and high boundaries for proper pairs: (1, 796) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (194, 313, 445) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 947) [M::mem_pestat] mean and std.dev: (331.67, 164.33) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1198) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (187, 289, 481) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1069) [M::mem_pestat] mean and std.dev: (362.78, 195.29) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1363) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 685826 reads in 148.897 CPU sec, 4.747 real sec sorting block 45, #reads = 1080722 mem = 536881682 peak = 1050890240 [M::mem_process_seqs] Processed 685266 reads in 93.569 CPU sec, 2.973 real sec sorting block 46, #reads = 1078762 mem = 536878930 peak = 1050890240 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (15, 283289, 3, 19) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (221, 370, 468) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 962) [M::mem_pestat] mean and std.dev: (305.54, 122.07) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1209) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (196, 317, 449) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 955) [M::mem_pestat] mean and std.dev: (334.90, 165.11) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1208) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (266, 289, 821) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1931) [M::mem_pestat] mean and std.dev: (458.71, 411.86) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2486) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683460 sequences (100000034 bp) in 2.380 CPU sec, 2.491 real sec... [M::process] read 683504 sequences (100000003 bp) in 1.420 CPU sec, 1.426 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (20, 282976, 10, 25) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (182, 220, 535) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1241) [M::mem_pestat] mean and std.dev: (305.94, 226.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1594) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (200, 322, 453) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 959) [M::mem_pestat] mean and std.dev: (338.65, 165.43) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1212) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (131, 341, 678) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1772) [M::mem_pestat] mean and std.dev: (500.80, 496.52) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2487) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (159, 203, 308) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 606) [M::mem_pestat] mean and std.dev: (218.08, 76.91) [M::mem_pestat] low and high boundaries for proper pairs: (1, 755) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 684606 reads in 151.149 CPU sec, 4.806 real sec [M::mem_process_seqs] Processed 683726 reads in 96.175 CPU sec, 3.051 real sec sorting block 47, #reads = 1078714 mem = 536879658 peak = 1050890240 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (26, 283000, 6, 20) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (221, 309, 767) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1859) [M::mem_pestat] mean and std.dev: (445.60, 353.11) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2405) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (201, 322, 453) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 957) [M::mem_pestat] mean and std.dev: (338.93, 165.63) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1209) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (242, 303, 550) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1166) [M::mem_pestat] mean and std.dev: (309.53, 131.00) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1474) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 683260 sequences (100000213 bp) in 2.051 CPU sec, 2.169 real sec... [M::process] read 683162 sequences (100000209 bp) in 1.410 CPU sec, 1.413 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (22, 283248, 1, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (199, 263, 495) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1087) [M::mem_pestat] mean and std.dev: (310.45, 213.73) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1383) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (200, 320, 452) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 956) [M::mem_pestat] mean and std.dev: (337.86, 165.96) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1208) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (176, 241, 663) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1637) [M::mem_pestat] mean and std.dev: (355.82, 253.90) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2124) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 683460 reads in 153.155 CPU sec, 4.882 real sec [M::mem_process_seqs] Processed 683504 reads in 96.864 CPU sec, 3.079 real sec sorting block 48, #reads = 1076609 mem = 536878946 peak = 1050890240 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 282478, 6, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (130, 196, 380) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 880) [M::mem_pestat] mean and std.dev: (266.30, 160.73) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1130) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (201, 322, 454) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 960) [M::mem_pestat] mean and std.dev: (339.90, 166.55) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1213) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (227, 348, 436) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 854) [M::mem_pestat] mean and std.dev: (315.50, 140.04) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1063) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 690908 sequences (100000129 bp) in 2.397 CPU sec, 2.499 real sec... [M::process] read 689570 sequences (100000197 bp) in 1.440 CPU sec, 1.434 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 283003, 7, 28) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (221, 308, 656) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1526) [M::mem_pestat] mean and std.dev: (426.85, 332.50) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1961) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (201, 322, 459) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 975) [M::mem_pestat] mean and std.dev: (341.91, 169.59) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1233) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (206, 392, 487) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1049) [M::mem_pestat] mean and std.dev: (390.85, 208.99) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1330) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 683260 reads in 156.292 CPU sec, 4.973 real sec sorting block 49, #reads = 1074979 mem = 536879386 peak = 1050890240 [M::mem_process_seqs] Processed 683162 reads in 100.205 CPU sec, 3.187 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (16, 286375, 2, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (165, 343, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1023) [M::mem_pestat] mean and std.dev: (312.75, 158.90) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1309) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (177, 276, 409) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 873) [M::mem_pestat] mean and std.dev: (304.54, 156.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1105) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (263, 384, 384) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (21, 626) [M::mem_pestat] mean and std.dev: (310.91, 101.73) [M::mem_pestat] low and high boundaries for proper pairs: (1, 747) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 690008 sequences (100000145 bp) in 2.128 CPU sec, 2.235 real sec... [M::process] read 688060 sequences (100000231 bp) in 1.420 CPU sec, 1.422 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (19, 285364, 4, 12) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (160, 203, 375) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 805) [M::mem_pestat] mean and std.dev: (272.17, 170.67) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1020) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (181, 286, 417) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 889) [M::mem_pestat] mean and std.dev: (310.22, 156.69) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1125) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (149, 251, 270) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 512) [M::mem_pestat] mean and std.dev: (192.70, 66.18) [M::mem_pestat] low and high boundaries for proper pairs: (1, 633) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 690908 reads in 156.454 CPU sec, 4.985 real sec sorting block 50, #reads = 1072039 mem = 536880046 peak = 1050890240 [M::mem_process_seqs] Processed 689570 reads in 96.157 CPU sec, 3.056 real sec sorting block 51, #reads = 1078173 mem = 536879121 peak = 1099358208 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 286274, 1, 24) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (210, 391, 920) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2340) [M::mem_pestat] mean and std.dev: (537.58, 466.66) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3050) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (179, 282, 413) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 881) [M::mem_pestat] mean and std.dev: (307.31, 155.61) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1115) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (190, 316, 544) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1252) [M::mem_pestat] mean and std.dev: (309.45, 188.77) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1606) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 686300 sequences (100000250 bp) in 2.527 CPU sec, 2.670 real sec... [M::process] read 684638 sequences (100000002 bp) in 1.450 CPU sec, 1.445 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (21, 284713, 4, 34) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (210, 649, 649) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1527) [M::mem_pestat] mean and std.dev: (480.33, 242.70) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1966) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (185, 293, 428) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 914) [M::mem_pestat] mean and std.dev: (318.03, 161.01) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1157) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (169, 283, 303) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 571) [M::mem_pestat] mean and std.dev: (250.22, 79.93) [M::mem_pestat] low and high boundaries for proper pairs: (1, 705) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 690008 reads in 155.665 CPU sec, 4.951 real sec [M::mem_process_seqs] Processed 688060 reads in 97.784 CPU sec, 3.107 real sec sorting block 52, #reads = 1077013 mem = 536876103 peak = 1099358208 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (32, 283944, 6, 20) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (138, 241, 643) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1653) [M::mem_pestat] mean and std.dev: (404.16, 432.65) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2158) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (190, 306, 441) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 943) [M::mem_pestat] mean and std.dev: (326.92, 163.16) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1194) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (305, 494, 534) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 992) [M::mem_pestat] mean and std.dev: (426.65, 123.17) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1221) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 684122 sequences (100000225 bp) in 2.071 CPU sec, 2.190 real sec... [M::process] read 683338 sequences (100000029 bp) in 1.460 CPU sec, 1.458 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 283750, 2, 18) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (217, 245, 839) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2083) [M::mem_pestat] mean and std.dev: (488.09, 598.89) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2884) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (195, 314, 448) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 954) [M::mem_pestat] mean and std.dev: (332.85, 163.95) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1207) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (239, 373, 878) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2156) [M::mem_pestat] mean and std.dev: (502.67, 395.46) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2795) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 686300 reads in 154.460 CPU sec, 4.926 real sec [M::mem_process_seqs] Processed 684638 reads in 97.693 CPU sec, 3.107 real sec sorting block 53, #reads = 1076874 mem = 536880449 peak = 1099358208 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (17, 283198, 5, 24) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (280, 415, 903) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2149) [M::mem_pestat] mean and std.dev: (540.00, 398.21) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2772) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (198, 316, 451) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 957) [M::mem_pestat] mean and std.dev: (335.83, 165.73) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1210) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (221, 403, 493) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1037) [M::mem_pestat] mean and std.dev: (382.00, 210.20) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1309) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::process] read 682744 sequences (100000033 bp) in 2.360 CPU sec, 2.452 real sec... [M::process] read 682314 sequences (100000043 bp) in 1.400 CPU sec, 1.405 real sec... [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (24, 282314, 10, 26) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (417, 570, 833) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1665) [M::mem_pestat] mean and std.dev: (621.30, 396.51) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2207) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (200, 321, 455) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 965) [M::mem_pestat] mean and std.dev: (339.06, 166.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1220) [M::mem_pestat] analyzing insert size distribution for orientation RF... [M::mem_pestat] (25, 50, 75) percentile: (44, 626, 812) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2348) [M::mem_pestat] mean and std.dev: (564.33, 661.30) [M::mem_pestat] low and high boundaries for proper pairs: (1, 3210) [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (209, 303, 353) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 641) [M::mem_pestat] mean and std.dev: (267.09, 99.51) [M::mem_pestat] low and high boundaries for proper pairs: (1, 785) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 684122 reads in 152.193 CPU sec, 4.844 real sec sorting block 54, #reads = 1075159 mem = 536877561 peak = 1099358208 [M::mem_process_seqs] Processed 683338 reads in 94.737 CPU sec, 3.008 real sec [M::process] read 212848 sequences (31162786 bp) in 0.831 CPU sec, 0.860 real sec... sorting block 55, #reads = 1077174 mem = 536883790 peak = 1099358208 [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (14, 281925, 4, 21) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (211, 227, 233) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (167, 277) [M::mem_pestat] mean and std.dev: (218.40, 15.46) [M::mem_pestat] low and high boundaries for proper pairs: (145, 299) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (203, 323, 455) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 959) [M::mem_pestat] mean and std.dev: (340.87, 166.06) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1211) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (142, 197, 810) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 2146) [M::mem_pestat] mean and std.dev: (452.38, 500.01) [M::mem_pestat] low and high boundaries for proper pairs: (1, 2814) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (23, 282667, 0, 23) [M::mem_pestat] analyzing insert size distribution for orientation FF... [M::mem_pestat] (25, 50, 75) percentile: (269, 403, 595) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1247) [M::mem_pestat] mean and std.dev: (413.77, 218.58) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1573) [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (205, 328, 462) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 976) [M::mem_pestat] mean and std.dev: (345.82, 169.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1233) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation RR... [M::mem_pestat] (25, 50, 75) percentile: (196, 382, 618) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 1462) [M::mem_pestat] mean and std.dev: (434.26, 246.08) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1884) [M::mem_pestat] skip orientation FF [M::mem_pestat] skip orientation RR [M::mem_process_seqs] Processed 682744 reads in 144.074 CPU sec, 4.674 real sec [M::mem_process_seqs] Processed 682314 reads in 89.293 CPU sec, 2.895 real sec [M::mem_pestat] # candidate unique pairs for (FF, FR, RF, RR): (2, 88148, 0, 9) [M::mem_pestat] skip orientation FF as there are not enough pairs [M::mem_pestat] analyzing insert size distribution for orientation FR... [M::mem_pestat] (25, 50, 75) percentile: (202, 323, 455) [M::mem_pestat] low and high boundaries for computing mean and std.dev: (1, 961) [M::mem_pestat] mean and std.dev: (341.25, 167.62) [M::mem_pestat] low and high boundaries for proper pairs: (1, 1214) [M::mem_pestat] skip orientation RF as there are not enough pairs [M::mem_pestat] skip orientation RR as there are not enough pairs [M::mem_process_seqs] Processed 212848 reads in 26.684 CPU sec, 0.899 real sec sorting block 56, #reads = 1075952 mem = 536877431 peak = 1099358208 os version: Linux 6.12.88 cpu vendor: GenuineIntel signature: 000a06d1 features: 1f8bfbff fffab20b extended: f1bf27eb 1b407f7e amd bits: 2c100800 00000121 brand: Intel(R) Xeon(R) 6975P-C threads: 31 algo: bwa-mem license: sentieon:klib=31 reads: 61789896 overall: 69856600064 mem 8321.968 user 327.340 sys 1186.371 real sorting block 57, #reads = 608450 mem = 303785352 peak = 1114288128 [main] Version: 0.7.17-r1188 [main] CMD: /opt/conda/share/sentieon-202308.03-3/libexec/bwa mem -K 100000000 -Y -R @RG\tID:A23MHWWLT4.1136_3U6-T1-TDNA-1_A23MHWWLT4_1.L002\tPU:L002\tSM:1136_3U6-T1-TDNA-1_A23MHWWLT4_1\tLB:1136_3U6-T1-TDNA-1_A23MHWWLT4_1\tDS:s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta\tPL:ILLUMINA -t 31 ./BWAIndex/Homo_sapiens_assembly38.fasta.64 0004.1136_3U6-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz 0004.1136_3U6-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz [main] Real time: 1186.409 sec; CPU: 8649.315 sec uniq header count 1 merging 58 blocks sw version: sentieon-genomics-202308.03 os version: Linux 6.12.88 cpu vendor: GenuineIntel signature: 000a06d1 features: 1f8bfbff fffab20b extended: f1bf27eb 1b407f7e amd bits: 2c100800 00000121 brand: Intel(R) Xeon(R) 6975P-C threads: 31 max 192 algo: util-sort license: sentieon:util=1 output file size: 3598082096 output reads: 62120256 bam_mem_sort: 58 calls 24.081 user 0.360 sys 24.520 real bam_write: 58 calls 27.571 user 1.122 sys 28.923 real execute: 1 calls 12.268 user 1.072 sys 1206.805 real merge_files: 1 calls 12.249 user 1.053 sys 19.642 real parse_chunk: 922 calls 32.021 user 8.727 sys 41.260 real read_chunk: 2487 calls 23.093 user 21.942 sys 238.435 real sort_block: 1 calls 18.307 user 21.313 sys 230.836 real write_chunk: 1563 calls 11.901 user 0.835 sys 18.868 real overall: 2663641088 mem 748.001 user 42.099 sys 1206.826 real ls: cannot access '*.cram': No such file or directory