Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/ebf8c638462d79a5888f5503bbb6ae/659_cAd-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/90fa73427dd77e6d9926df98eaea4c/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_coding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/1b/ebf8c638462d79a5888f5503bbb6ae/659_cAd-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6c/90fa73427dd77e6d9926df98eaea4c/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cAd-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_cAd-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 3.2s, est remaining 59.9s, peak mem 3162MB, user 75.5s, sys 2.3s, output queue size 84
progress 10% @chr1:226000001, elapsed 6.1s, est remaining 55.3s, peak mem 4201MB, user 166.3s, sys 4.3s, output queue size 96
progress 15% @chr3:13000001, elapsed 10.3s, est remaining 58.1s, peak mem 6707MB, user 274.6s, sys 8.3s, output queue size 203
progress 20% @chr3:176000001, elapsed 13.1s, est remaining 52.3s, peak mem 6905MB, user 369.4s, sys 12.3s, output queue size 174
progress 25% @chr4:129000001, elapsed 15.7s, est remaining 47.0s, peak mem 7047MB, user 447.9s, sys 13.4s, output queue size 302
progress 30% @chr5:106000001, elapsed 17.7s, est remaining 41.3s, peak mem 7279MB, user 512.6s, sys 13.9s, output queue size 464
progress 35% @chr6:78000001, elapsed 20.3s, est remaining 37.8s, peak mem 7443MB, user 586.9s, sys 14.9s, output queue size 625
progress 40% @chr7:66000001, elapsed 23.7s, est remaining 35.6s, peak mem 7814MB, user 674.9s, sys 15.7s, output queue size 786
progress 45% @chr8:78000001, elapsed 27.7s, est remaining 33.8s, peak mem 7977MB, user 781.1s, sys 16.6s, output queue size 948
progress 50% @chr9:39000001, elapsed 30.8s, est remaining 30.8s, peak mem 8297MB, user 881.7s, sys 17.5s, output queue size 366
progress 55% @chr10:115000001, elapsed 34.1s, est remaining 27.9s, peak mem 8327MB, user 992.6s, sys 18.4s, output queue size 527
progress 60% @chr10:87000001, elapsed 37.4s, est remaining 24.9s, peak mem 8327MB, user 1089.9s, sys 19.2s, output queue size 689
progress 65% @chr13:33000001, elapsed 41.7s, est remaining 22.4s, peak mem 8405MB, user 1213.1s, sys 20.0s, output queue size 672
progress 70% @chr14:84000001, elapsed 43.9s, est remaining 18.8s, peak mem 8405MB, user 1296.1s, sys 20.6s, output queue size 833
progress 75% @chr16:42000001, elapsed 47.9s, est remaining 16.0s, peak mem 8531MB, user 1404.1s, sys 21.6s, output queue size 995
progress 80% @chr17:58000001, elapsed 52.5s, est remaining 13.1s, peak mem 8623MB, user 1547.8s, sys 22.8s, output queue size 623
progress 85% @chr17:40000001, elapsed 56.5s, est remaining 10.0s, peak mem 8623MB, user 1677.9s, sys 23.6s, output queue size 785
progress 90% @chr22:50000001, elapsed 59.5s, est remaining 6.6s, peak mem 8971MB, user 1757.9s, sys 24.4s, output queue size 947
progress 95% @chrY:52000001, elapsed 61.9s, est remaining 3.3s, peak mem 9170MB, user 1843.4s, sys 25.2s, output queue size 675
progress 100% @chrX:67000001, elapsed 68.3s, est remaining 0.0s, peak mem 9170MB, user 1939.3s, sys 26.0s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 59984754244
reads: 1231081686
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 949.593 user 22.468 sys 970.309 real
done: 1 calls 0.018 user 0.009 sys 0.033 real
exec_no_coor: 1 calls 0.005 user 0.011 sys 0.026 real
execute: 1 calls 0.004 user 0.002 sys 68.297 real
idle: 200 calls 0.150 user 0.001 sys 182.165 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 9616293888 mem 1940.104 user 26.292 sys 69.614 real