Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/51eb82a4f2854a4234b9c2f065cf35/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/80/adb3b05c9c785dfbdb1fad08044ccf/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ab/ba88c2d42b2b2bb629cf45f1cb5632/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2f/bc1e8bb5e5d2f04e793e238ff1f230/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/72/aee21d6fc61e3353d1ceaaa8ec1d8b/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/9556f64f14871d8c3657ba8278cf31/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/a3986beb8a4d686b68569a122ec1f1/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/e28064fbb6c5f85824cadc4ce3dc46/.command.sh
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/91/da0f08ddc1990ac4f72a7130d72eb8/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/c4/c1d1584c986dc832b3e5eba6ca2bf5/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8f/626848115fb56fd456ca742d4e06f4/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/90/8b478619550fca326ef5e4935cedc8/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/2a/7fd3df2f703d0d73099461ef9b62ac/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7c/549bf6fe46967229dadc800683570f/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/8a/e1f1e8986dd7e6db0e9d19c7d3cec1/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/47/6a112d1aeaa408d01acda29340dc8a/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/e0df3073c44643725e65b3b35c7f27/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/60/fcf6d1c0fcc734eb4b806ccbb99531/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/86/189289abe90402fe524772d8f46f4d/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/45/046c24419588f6ee5e5000e0899aaa/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/66/b2f7cb995c00344275183b89dcf2d0/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/ce99672fbaf8265a1f6092fbf73958/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/64/499139db71b81f32ad647486d379d6/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/78/8205a65dec8ca7d382a5823cc2b61e/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/89/16419105ae7db0798c9acb59c89cd8/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/28/baaf79a4987328351ef5e5fb6020dd/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f3/491256d25a089b9307c767358cfaf5/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/bf/8adbdbd1115130e86f5860ba194bf8/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4f/925895f14c05983fd553fa16f3c06f/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/55/9db859f9837f7295824c00a013bcc7/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/38/7b99ad96e11161068bd605f6e0cb3f/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/46/906b84cb27029ed0ccec81d8ef8961/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/e28064fbb6c5f85824cadc4ce3dc46/.command.run
Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a1/104812b8528f8dbcf3eba9c3d29bdc/1136_27F-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (36 inputs)
ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory