File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7e/25e8003f7228dac82ffd3d646e3342/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 79128591
total bases: 11948417241
Q20 bases: 11595520072(97.0465%)
Q30 bases: 10927303011(91.454%)
Q40 bases: 10927303011(91.454%)

Read2 before filtering:
total reads: 79128591
total bases: 11948417241
Q20 bases: 11266286253(94.291%)
Q30 bases: 10159468987(85.0277%)
Q40 bases: 10159468987(85.0277%)

Read1 after filtering:
total reads: 77333695
total bases: 11325214492
Q20 bases: 11047345458(97.5465%)
Q30 bases: 10457592766(92.339%)
Q40 bases: 10457592766(92.339%)

Read2 after filtering:
total reads: 77333695
total bases: 11326059591
Q20 bases: 10801118267(95.3652%)
Q30 bases: 9826384545(86.7591%)
Q40 bases: 9826384545(86.7591%)

Filtering result:
reads passed filter: 154667390
reads failed due to low quality: 3577334
reads failed due to too many N: 10190
reads failed due to too short: 2268
reads with adapter trimmed: 19327452
bases trimmed due to adapters: 706428358

Duplication rate: 11.199%

Insert size peak (evaluated by paired-end reads): 225

JSON report: 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L006_R1_001.fastq.gz --in2 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_S36_L006_R2_001.fastq.gz --out1 1029_FZX-T1-TDNA-1_A23MHWWLT4_1/1029_FZX-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_FZX-T1-TDNA-1_A23MHWWLT4_1/1029_FZX-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 1029 seconds