Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/bee54826064cf7b2b958061ea5f78b/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/FINAL_hotspot_list_07302025_hg38_sorted.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/3e3d39f0664f31d4db697ffa24661d/1136_81F-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/83/bee54826064cf7b2b958061ea5f78b/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/e8/3e3d39f0664f31d4db697ffa24661d/1136_81F-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_81F-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_81F-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 4.3s, est remaining 81.4s, peak mem 2685MB, user 104.0s, sys 3.9s, output queue size 145
progress 10% @chr2:79000001, elapsed 7.2s, est remaining 64.4s, peak mem 3481MB, user 193.8s, sys 6.1s, output queue size 166
progress 15% @chr3:3000001, elapsed 10.2s, est remaining 57.8s, peak mem 3773MB, user 291.7s, sys 8.6s, output queue size 122
progress 20% @chr3:154000001, elapsed 13.2s, est remaining 53.0s, peak mem 3851MB, user 382.7s, sys 9.6s, output queue size 141
progress 25% @chr4:132000001, elapsed 15.9s, est remaining 47.6s, peak mem 4017MB, user 459.8s, sys 10.4s, output queue size 302
progress 30% @chr5:105000001, elapsed 17.8s, est remaining 41.6s, peak mem 4066MB, user 524.7s, sys 11.0s, output queue size 268
progress 35% @chr6:37000001, elapsed 20.9s, est remaining 38.9s, peak mem 4131MB, user 610.0s, sys 11.9s, output queue size 106
progress 40% @chr7:47000001, elapsed 24.0s, est remaining 36.0s, peak mem 4336MB, user 704.9s, sys 13.0s, output queue size 195
progress 45% @chr8:70000001, elapsed 27.5s, est remaining 33.6s, peak mem 4421MB, user 805.0s, sys 13.9s, output queue size 204
progress 50% @chr9:34000001, elapsed 30.0s, est remaining 30.0s, peak mem 4634MB, user 890.3s, sys 14.6s, output queue size 187
progress 55% @chr9:134000001, elapsed 33.6s, est remaining 27.5s, peak mem 5107MB, user 1000.8s, sys 15.5s, output queue size 342
progress 60% @chr11:108000001, elapsed 37.7s, est remaining 25.1s, peak mem 5232MB, user 1116.1s, sys 16.4s, output queue size 136
progress 65% @chr12:111000001, elapsed 41.1s, est remaining 22.1s, peak mem 5625MB, user 1219.1s, sys 17.3s, output queue size 216
progress 70% @chr14:83000001, elapsed 43.2s, est remaining 18.5s, peak mem 5666MB, user 1272.4s, sys 17.7s, output queue size 377
progress 75% @chr16:42000001, elapsed 47.0s, est remaining 15.7s, peak mem 5886MB, user 1390.9s, sys 18.8s, output queue size 531
progress 80% @chr17:63000001, elapsed 52.4s, est remaining 13.1s, peak mem 5886MB, user 1554.3s, sys 20.2s, output queue size 280
progress 85% @chr20:23000001, elapsed 57.9s, est remaining 10.2s, peak mem 6000MB, user 1730.4s, sys 21.6s, output queue size 80
progress 90% @chrX:30000001, elapsed 60.7s, est remaining 6.7s, peak mem 6000MB, user 1837.8s, sys 22.4s, output queue size 121
progress 95% @chrY:52000001, elapsed 63.3s, est remaining 3.3s, peak mem 6000MB, user 1914.6s, sys 23.1s, output queue size 211
progress 100% @chrX:67000001, elapsed 66.8s, est remaining 0.0s, peak mem 6000MB, user 1968.0s, sys 23.7s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 63239640700
reads: 1187143287
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 993.785 user 20.452 sys 1012.628 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.007 user 0.034 sys 0.057 real
execute: 1 calls 0.006 user 0.001 sys 66.767 real
idle: 133 calls 0.144 user 0.001 sys 107.171 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6291529728 mem 1969.047 user 24.045 sys 68.108 real