File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/48/972ff9b724a9a33ec96cbd2b070b6e/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 62605942
total bases: 9453497242
Q20 bases: 9250131873(97.8488%)
Q30 bases: 8914595873(94.2994%)
Q40 bases: 8914595873(94.2994%)

Read2 before filtering:
total reads: 62605942
total bases: 9453497242
Q20 bases: 9218345265(97.5125%)
Q30 bases: 8820212768(93.3011%)
Q40 bases: 8820212768(93.3011%)

Read1 after filtering:
total reads: 62130164
total bases: 8556215379
Q20 bases: 8438494184(98.6241%)
Q30 bases: 8175590205(95.5515%)
Q40 bases: 8175590205(95.5515%)

Read2 after filtering:
total reads: 62130164
total bases: 8557483592
Q20 bases: 8411982412(98.2997%)
Q30 bases: 8110312915(94.7745%)
Q40 bases: 8110312915(94.7745%)

Filtering result:
reads passed filter: 124260328
reads failed due to low quality: 929348
reads failed due to too many N: 19720
reads failed due to too short: 2488
reads with adapter trimmed: 45089146
bases trimmed due to adapters: 1654770334

Duplication rate: 11.3655%

Insert size peak (evaluated by paired-end reads): 126

JSON report: 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L002_R1_001.fastq.gz --in2 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L002_R2_001.fastq.gz --out1 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 373 seconds