cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_253-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_253-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 9.6s, est remaining 182.3s, peak mem 5570MB, user 255.2s, sys 4.8s, output queue size 175
progress 10% @chr2:23786027, elapsed 19.8s, est remaining 178.3s, peak mem 6856MB, user 528.4s, sys 8.3s, output queue size 1158
progress 15% @chr2:185788643, elapsed 29.6s, est remaining 167.6s, peak mem 8065MB, user 791.1s, sys 11.1s, output queue size 272
progress 20% @chr3:100171839, elapsed 39.2s, est remaining 157.0s, peak mem 8070MB, user 1054.0s, sys 12.9s, output queue size 446
progress 25% @chr4:88500915, elapsed 47.0s, est remaining 141.0s, peak mem 8268MB, user 1257.9s, sys 14.7s, output queue size 87
progress 30% @chr5:147640704, elapsed 53.9s, est remaining 125.8s, peak mem 8356MB, user 1438.5s, sys 16.2s, output queue size 206
progress 35% @chr6:131700469, elapsed 64.5s, est remaining 119.8s, peak mem 8390MB, user 1724.5s, sys 18.2s, output queue size 640
progress 40% @chr7:128946501, elapsed 74.0s, est remaining 111.0s, peak mem 8804MB, user 1971.9s, sys 20.1s, output queue size 1468
progress 45% @chr9:740792, elapsed 84.3s, est remaining 103.0s, peak mem 9118MB, user 2254.3s, sys 22.2s, output queue size 19
progress 50% @chr10:34284135, elapsed 93.6s, est remaining 93.6s, peak mem 9118MB, user 2504.2s, sys 23.8s, output queue size 103
progress 55% @chr11:48164380, elapsed 101.3s, est remaining 82.9s, peak mem 9118MB, user 2710.0s, sys 25.1s, output queue size 26
progress 60% @chr12:26230711, elapsed 111.7s, est remaining 74.5s, peak mem 9178MB, user 2986.4s, sys 27.2s, output queue size 811
progress 65% @chr13:40555668, elapsed 120.8s, est remaining 65.1s, peak mem 9192MB, user 3240.4s, sys 28.9s, output queue size 562
progress 70% @chr15:43085984, elapsed 129.2s, est remaining 55.4s, peak mem 9192MB, user 3465.2s, sys 30.5s, output queue size 457
progress 75% @chr16:30953185, elapsed 140.0s, est remaining 46.7s, peak mem 9192MB, user 3766.0s, sys 32.6s, output queue size 31
progress 80% @chr17:42691137, elapsed 151.1s, est remaining 37.8s, peak mem 9192MB, user 4070.8s, sys 34.7s, output queue size 706
progress 85% @chr19:5733856, elapsed 160.4s, est remaining 28.3s, peak mem 9192MB, user 4325.9s, sys 36.4s, output queue size 403
progress 90% @chr19:55613619, elapsed 169.2s, est remaining 18.8s, peak mem 9192MB, user 4566.8s, sys 38.1s, output queue size 76
progress 95% @chr22:36523895, elapsed 179.7s, est remaining 9.5s, peak mem 9441MB, user 4853.8s, sys 40.3s, output queue size 25
progress 100% @chrY:25622443, elapsed 185.6s, est remaining 0.0s, peak mem 9463MB, user 5008.7s, sys 41.4s, output queue size 31
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 71204379079
reads: 1300983781
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2659.552 user 34.858 sys 2778.025 real
done: 1 calls 0.408 user 0.317 sys 0.731 real
execute: 1 calls 0.006 user 0.009 sys 185.567 real
fetch_reads: 208647 calls 261.134 user 0.520 sys 269.742 real
fetch_ref: 207373 calls 0.791 user 0.944 sys 1.742 real
fetch_vcf: 207373 calls 80.517 user 1.820 sys 83.611 real
idle: 92 calls 0.176 user 0.000 sys 33.450 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 451543 calls 2423.430 user 2.206 sys 2478.078 real
overall: 9923395584 mem 5609.855 user 42.691 sys 187.349 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory