Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/2d8e8906ece6eed2fda79082f78da1/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr4_22420786-22421189.bed.gz
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3b8f493c4bbd324b6d78581c167e95/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.recalibrated.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3b8f493c4bbd324b6d78581c167e95/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/56/2d8e8906ece6eed2fda79082f78da1/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878.bam
==> STAGING COMPLETE (10 inputs)

[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXF0VfRc/chr4_22420786-22421189.bed.gz.tbi
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXF0VfRc/chr4_22420786-22421189.bed.gz.tbi

Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[W::hts_idx_load2] The index file is older than the data file: /tmp/nxf.XXXXF0VfRc/chr4_22420786-22421189.bed.gz.tbi
[2026-06-06T01:01:44.634180Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-06T01:01:44.638314Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-06T01:01:44.638328Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-06T01:01:44.638332Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-06T01:01:44.638336Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXF0VfRc'
[2026-06-06T01:01:44.638340Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-06T01:01:44.638344Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-06T01:01:44.638348Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-06T01:01:44.638351Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-06T01:01:44.638355Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-06T01:01:44.638359Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-06T01:01:44.638362Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-06T01:01:44.638366Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-06T01:01:44.638370Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-06T01:01:44.639145Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-06T01:01:44.639284Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-06T01:01:44.645135Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-06T01:01:44.645728Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-06T01:01:44.645872Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-06T01:01:44.646224Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-06T01:01:44.646463Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.646968Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647063Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647135Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647250Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647315Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647434Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647497Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647612Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647693Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.647997Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.648411Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.648640Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.648781Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.649432Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.650226Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.651525Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.651803Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.651981Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-06T01:01:44.652063Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.652216Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.652411Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.652755Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.652970Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653091Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653160Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653282Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653355Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653468Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653539Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653666Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653739Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653866Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.653937Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.654056Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.654199Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.654713Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.654789Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.654916Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655004Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655126Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655193Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655309Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655380Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655493Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655565Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.655776Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656217Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656414Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656483Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656598Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656663Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656791Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656859Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.656978Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.657046Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.657163Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.657228Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.657339Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.657551Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658074Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658150Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658273Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658343Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658455Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658530Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658666Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658738Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658857Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.658932Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.659095Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.659251Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.659958Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.660463Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.661740Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.662305Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.662440Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.662524Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.662663Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.662750Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.662877Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.662953Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.663079Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.663154Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.663276Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.663411Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.663642Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.664276Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.664546Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.665129Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.665338Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.665999Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.666275Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.666348Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.666468Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.666537Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.682806Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.683370Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.683495Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.683655Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.684541Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.684701Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.684787Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.684962Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.685041Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.685507Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.685763Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.686225Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.686528Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.687211Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-06T01:01:44.687396Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.688214Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.689320Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.691335Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.691881Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0002] Task initiated on local node
[2026-06-06T01:01:44.692356Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.699677Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0007] Task initiated on local node
[2026-06-06T01:01:44.700153Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0010] Task initiated on local node
[2026-06-06T01:01:44.702426Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0003] Task initiated on local node
[2026-06-06T01:01:44.705308Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0005] Task initiated on local node
[2026-06-06T01:01:44.708001Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0011] Task initiated on local node
[2026-06-06T01:01:44.708992Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0005] Task initiated on local node
[2026-06-06T01:01:44.711145Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0007] Task initiated on local node
[2026-06-06T01:01:50.978446Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:50.979532Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:50.982124Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0003] Task initiated on local node
[2026-06-06T01:02:03.902455Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:03.904061Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:02:03.906971Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0014] Task initiated on local node
[2026-06-06T01:02:09.420377Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:09.421601Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:02:09.424105Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0008] Task initiated on local node
[2026-06-06T01:02:14.687298Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:14.688293Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:02:14.691128Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0012] Task initiated on local node
[2026-06-06T01:02:17.007947Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.008984Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.011736Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0013] Task initiated on local node
[2026-06-06T01:02:20.631267Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:20.632282Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:20.635222Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0001] Task initiated on local node
[2026-06-06T01:02:21.297730Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:21.298804Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:02:21.301885Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0004] Task initiated on local node
[2026-06-06T01:02:27.817393Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.818516Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.821044Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0007] Task initiated on local node
[2026-06-06T01:02:27.882658Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.883530Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.885863Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0001] Task initiated on local node
[2026-06-06T01:02:27.915491Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.916349Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.919204Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0005] Task initiated on local node
[2026-06-06T01:02:27.948203Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.949030Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:27.951594Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0001] Task initiated on local node
[2026-06-06T01:02:28.664986Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.666002Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.668676Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0012] Task initiated on local node
[2026-06-06T01:02:28.697952Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.698823Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.701267Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0000] Task initiated on local node
[2026-06-06T01:02:29.865664Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.866656Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.869772Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0000] Task initiated on local node
[2026-06-06T01:02:33.840504Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:33.841466Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:02:33.844515Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0011] Task initiated on local node
[2026-06-06T01:02:37.914961Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:37.915809Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:02:37.918488Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0011] Task initiated on local node
[2026-06-06T01:02:37.979742Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:37.980540Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:02:37.983322Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0015] Task initiated on local node
[2026-06-06T01:02:40.350182Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:40.351142Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:40.354129Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0001] Task initiated on local node
[2026-06-06T01:02:40.383299Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:40.384104Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:02:40.386635Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0006] Task initiated on local node
[2026-06-06T01:02:52.555596Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:52.556925Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:02:52.559278Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0005] Task initiated on local node
[2026-06-06T01:02:52.621125Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:52.621971Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:02:52.624474Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0011] Task initiated on local node
[2026-06-06T01:03:10.695461Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:10.697115Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:03:10.699866Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0006] Task initiated on local node
[2026-06-06T01:03:10.761371Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:10.762184Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:03:10.764640Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0014] Task initiated on local node
[2026-06-06T01:03:10.826307Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:10.827151Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:03:10.829577Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0006] Task initiated on local node
[2026-06-06T01:03:14.249339Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.250234Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.252759Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0000] Task initiated on local node
[2026-06-06T01:03:14.314508Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.315314Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:03:14.318039Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0010] Task initiated on local node
[2026-06-06T01:03:25.634299Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.635731Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.638246Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0004] Task initiated on local node
[2026-06-06T01:03:29.308408Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.309276Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.312164Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0000] Task initiated on local node
[2026-06-06T01:03:29.373418Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.374172Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.376722Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0014] Task initiated on local node
[2026-06-06T01:03:29.406328Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.407108Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.409746Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0009] Task initiated on local node
[2026-06-06T01:03:31.726930Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.727861Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.730380Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0010] Task initiated on local node
[2026-06-06T01:03:31.759761Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.760490Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.763211Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0008] Task initiated on local node
[2026-06-06T01:03:31.792437Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.793148Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.795341Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0003] Task initiated on local node
[2026-06-06T01:03:31.825237Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.825963Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.828561Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0007] Task initiated on local node
[2026-06-06T01:03:31.890140Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.890906Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.893174Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0006] Task initiated on local node
[2026-06-06T01:03:31.954876Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.955603Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:03:31.957996Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0002] Task initiated on local node
[2026-06-06T01:03:39.375153Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:39.375872Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:03:39.378347Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0003] Task initiated on local node
[2026-06-06T01:03:39.439893Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:39.440608Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:03:39.443233Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0008] Task initiated on local node
[2026-06-06T01:03:40.807414Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.808199Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.811020Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0013] Task initiated on local node
[2026-06-06T01:03:40.872185Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.872927Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.875302Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0014] Task initiated on local node
[2026-06-06T01:03:40.904749Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.905449Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.908089Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0011] Task initiated on local node
[2026-06-06T01:03:40.937493Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.938241Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:03:40.941015Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0012] Task initiated on local node
[2026-06-06T01:03:45.462094Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:45.462942Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:45.465611Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0001] Task initiated on local node
[2026-06-06T01:03:49.735942Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:49.736628Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:03:49.739370Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0006] Task initiated on local node
[2026-06-06T01:04:28.815328Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:28.816566Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:04:28.819356Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0010] Task initiated on local node
[2026-06-06T01:04:29.733233Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.734024Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.736631Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0001] Task initiated on local node
[2026-06-06T01:04:29.766073Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.766751Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.769441Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0004] Task initiated on local node
[2026-06-06T01:04:29.830754Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.831396Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:04:29.834174Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0014] Task initiated on local node
[2026-06-06T01:04:40.097462Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:40.099007Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:04:40.101886Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0009] Task initiated on local node
[2026-06-06T01:04:40.163045Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:40.163681Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:40.166230Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0004] Task initiated on local node
[2026-06-06T01:04:40.195695Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:40.196318Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:04:40.199005Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0007] Task initiated on local node
[2026-06-06T01:04:47.265819Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:47.266518Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:47.269192Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0006] Task initiated on local node
[2026-06-06T01:04:47.330570Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:47.331218Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:04:47.333458Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0012] Task initiated on local node
[2026-06-06T01:04:48.448070Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:48.448771Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' from sub-workflow 'CallGenome'
[2026-06-06T01:04:48.451594Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0014] Task initiated on local node
[2026-06-06T01:04:48.512988Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0014' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:48.513627Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:04:48.516158Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0005] Task initiated on local node
[2026-06-06T01:05:00.283412Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:00.284237Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:05:00.287316Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0012] Task initiated on local node
[2026-06-06T01:05:00.348682Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:00.349311Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:00.351822Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0000] Task initiated on local node
[2026-06-06T01:05:00.413332Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:00.413948Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:00.416958Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0003] Task initiated on local node
[2026-06-06T01:05:18.637218Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:18.638476Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:18.641232Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0005] Task initiated on local node
[2026-06-06T01:05:18.702426Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:18.703046Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:05:18.705618Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0015] Task initiated on local node
[2026-06-06T01:05:22.275316Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:22.276024Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:05:22.278489Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0015] Task initiated on local node
[2026-06-06T01:05:22.339955Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:22.340581Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:05:22.343219Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0009] Task initiated on local node
[2026-06-06T01:05:24.208992Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.209653Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.212213Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0011] Task initiated on local node
[2026-06-06T01:05:24.274097Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.274704Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.277491Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0013] Task initiated on local node
[2026-06-06T01:05:24.339182Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.339775Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.342050Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0013] Task initiated on local node
[2026-06-06T01:05:24.371922Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.372501Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:05:24.375055Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_004_chr5_0009] Task initiated on local node
[2026-06-06T01:05:35.640515Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:35.641570Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:05:35.644652Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0009] Task initiated on local node
[2026-06-06T01:05:35.705799Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:35.706361Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:05:35.708949Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0008] Task initiated on local node
[2026-06-06T01:05:35.770311Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:35.770903Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:05:35.773404Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0004] Task initiated on local node
[2026-06-06T01:05:40.044205Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:40.044824Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:05:40.047492Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0012] Task initiated on local node
[2026-06-06T01:05:40.109057Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:40.109620Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:05:40.112365Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0002] Task initiated on local node
[2026-06-06T01:05:48.682547Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.684183Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.686800Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0015] Task initiated on local node
[2026-06-06T01:05:48.691972Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.692468Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.694902Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0010] Task initiated on local node
[2026-06-06T01:05:48.724219Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0015' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.724282Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.724750Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.725027Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.727458Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0002] Task initiated on local node
[2026-06-06T01:05:48.728426Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_003_chr4_0013] Task initiated on local node
[2026-06-06T01:05:48.756872Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.757369Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.759540Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0010] Task initiated on local node
[2026-06-06T01:05:48.789146Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.789649Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.791801Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_003_chr4_0000] Task initiated on local node
[2026-06-06T01:05:48.854540Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.855064Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.857149Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0000] Task initiated on local node
[2026-06-06T01:05:48.887033Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.887543Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:05:48.889877Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_005_chr6_0008] Task initiated on local node
[2026-06-06T01:05:51.257400Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:51.258046Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:05:51.260728Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_004_chr5_0009] Task initiated on local node
[2026-06-06T01:05:51.322009Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_004_chr5_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:52.388323Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:52.388844Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:05:52.391622Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0002] Task initiated on local node
[2026-06-06T01:05:52.420773Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:59.239398Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:59.240308Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:05:59.242747Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0013] Task initiated on local node
[2026-06-06T01:05:59.272235Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:07.193053Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:07.193618Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:06:07.196153Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0008] Task initiated on local node
[2026-06-06T01:06:07.225458Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:52.204322Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:52.205743Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:06:52.208712Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0007] Task initiated on local node
[2026-06-06T01:06:52.270023Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:53.687056Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:53.687551Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:06:53.690108Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0003] Task initiated on local node
[2026-06-06T01:06:53.751543Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:54.416925Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:54.417359Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:06:54.419779Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_003_chr4_0004] Task initiated on local node
[2026-06-06T01:06:54.481315Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_003_chr4_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.280686Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.281307Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.283907Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_005_chr6_0002] Task initiated on local node
[2026-06-06T01:12:05.345449Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_005_chr6_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.345709Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.345819Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.346452Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.347252Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.349033Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-06T01:12:05.351312Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-06T01:12:05.352219Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-06T01:12:05.380430Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.380489Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.380514Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.380707Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.381385Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.383853Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-06T01:12:05.384528Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-06T01:12:05.445549Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.445616Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.445779Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:12:05.447994Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-06T01:12:05.477696Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:12:18.399603Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-06T01:12:33.364780Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-06T01:12:33.364780Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] 
[2026-06-06T01:12:33.364780Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-06T01:12:33.364836Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] 
[2026-06-06T01:12:33.364843Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-06T01:12:33.364850Z] [nf-562d8e8906ece6eed2fda79082f78da1-3dd33-84lps] [590_1] [WorkflowRunner] Elapsed time for full workflow: 648 sec