cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_bgw-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 659_bgw-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119986928, elapsed 5.6s, est remaining 106.0s, peak mem 4552MB, user 148.2s, sys 5.6s, output queue size 178
progress 10% @chr2:21001730, elapsed 12.9s, est remaining 116.3s, peak mem 5867MB, user 348.4s, sys 8.9s, output queue size 657
progress 15% @chr2:190062224, elapsed 22.5s, est remaining 127.4s, peak mem 7459MB, user 615.5s, sys 11.7s, output queue size 299
progress 20% @chr3:100171839, elapsed 31.8s, est remaining 127.1s, peak mem 8208MB, user 873.9s, sys 13.8s, output queue size 679
progress 25% @chr4:88463532, elapsed 38.6s, est remaining 115.7s, peak mem 8282MB, user 1061.6s, sys 15.6s, output queue size 87
progress 30% @chr5:147509478, elapsed 45.0s, est remaining 105.1s, peak mem 8282MB, user 1237.7s, sys 17.1s, output queue size 194
progress 35% @chr6:131868018, elapsed 54.1s, est remaining 100.4s, peak mem 8282MB, user 1485.5s, sys 19.0s, output queue size 637
progress 40% @chr7:128830638, elapsed 63.7s, est remaining 95.5s, peak mem 8543MB, user 1753.3s, sys 21.1s, output queue size 552
progress 45% @chr9:2028988, elapsed 72.9s, est remaining 89.1s, peak mem 9127MB, user 2010.7s, sys 23.0s, output queue size 1473
progress 50% @chr10:33192281, elapsed 80.2s, est remaining 80.2s, peak mem 9160MB, user 2214.8s, sys 24.6s, output queue size 105
progress 55% @chr11:48324941, elapsed 87.3s, est remaining 71.5s, peak mem 9160MB, user 2409.9s, sys 25.7s, output queue size 14
progress 60% @chr12:25101178, elapsed 96.2s, est remaining 64.1s, peak mem 9160MB, user 2654.7s, sys 27.4s, output queue size 754
progress 65% @chr13:49488290, elapsed 104.4s, est remaining 56.2s, peak mem 9160MB, user 2883.5s, sys 29.0s, output queue size 564
progress 70% @chr15:43074979, elapsed 112.0s, est remaining 48.0s, peak mem 9160MB, user 3091.0s, sys 30.4s, output queue size 454
progress 75% @chr16:30768103, elapsed 120.2s, est remaining 40.1s, peak mem 9160MB, user 3320.8s, sys 32.0s, output queue size 30
progress 80% @chr17:42692499, elapsed 127.9s, est remaining 32.0s, peak mem 9160MB, user 3535.1s, sys 33.5s, output queue size 705
progress 85% @chr19:5739326, elapsed 134.2s, est remaining 23.7s, peak mem 9160MB, user 3710.0s, sys 34.9s, output queue size 405
progress 90% @chr19:55517224, elapsed 141.0s, est remaining 15.7s, peak mem 9160MB, user 3896.4s, sys 36.1s, output queue size 66
progress 95% @chr22:36501241, elapsed 147.6s, est remaining 7.8s, peak mem 9160MB, user 4077.9s, sys 37.3s, output queue size 22
progress 100% @chrX:155382115, elapsed 153.1s, est remaining 0.0s, peak mem 9160MB, user 4227.7s, sys 38.2s, output queue size 586
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 62674382657
reads: 1298116536
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2292.497 user 29.223 sys 2418.045 real
done: 1 calls 0.356 user 0.410 sys 0.770 real
execute: 1 calls 0.007 user 0.002 sys 153.121 real
fetch_reads: 208647 calls 203.099 user 0.465 sys 210.686 real
fetch_ref: 206964 calls 1.383 user 1.123 sys 2.133 real
fetch_vcf: 206964 calls 80.103 user 2.155 sys 85.807 real
idle: 99 calls 0.115 user 0.003 sys 32.062 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 417520 calls 1839.870 user 3.713 sys 1901.381 real
overall: 9605496832 mem 4608.963 user 39.643 sys 154.672 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory