File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/91374f1017c07e1031e3640b2945c4/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 3.6s, est remaining 69.0s, peak mem 2292MB, user 80.5s, sys 2.2s, output queue size 146
progress 10% @chr2:46000001, elapsed 6.4s, est remaining 58.0s, peak mem 3075MB, user 174.7s, sys 3.3s, output queue size 117
progress 15% @chr2:177000001, elapsed 9.5s, est remaining 53.7s, peak mem 3677MB, user 270.6s, sys 5.3s, output queue size 122
progress 20% @chr3:167000001, elapsed 12.2s, est remaining 48.8s, peak mem 3863MB, user 351.8s, sys 5.9s, output queue size 141
progress 25% @chr4:136000001, elapsed 14.5s, est remaining 43.6s, peak mem 3915MB, user 428.0s, sys 6.6s, output queue size 302
progress 30% @chr5:81000001, elapsed 16.3s, est remaining 38.0s, peak mem 3978MB, user 471.1s, sys 7.0s, output queue size 464
progress 35% @chr5:180000001, elapsed 18.2s, est remaining 33.9s, peak mem 4051MB, user 533.4s, sys 7.5s, output queue size 625
progress 40% @chr7:2000001, elapsed 20.9s, est remaining 31.4s, peak mem 4347MB, user 618.0s, sys 8.3s, output queue size 231
progress 45% @chr8:70000001, elapsed 24.4s, est remaining 29.8s, peak mem 4728MB, user 716.2s, sys 9.2s, output queue size 204
progress 50% @chr9:102000001, elapsed 26.8s, est remaining 26.8s, peak mem 4919MB, user 772.0s, sys 9.6s, output queue size 366
progress 55% @chr10:99000001, elapsed 29.6s, est remaining 24.2s, peak mem 4973MB, user 859.4s, sys 10.2s, output queue size 527
progress 60% @chr11:69000001, elapsed 32.4s, est remaining 21.6s, peak mem 5014MB, user 940.4s, sys 10.7s, output queue size 647
progress 65% @chr12:52000001, elapsed 35.3s, est remaining 19.0s, peak mem 5065MB, user 1051.7s, sys 11.5s, output queue size 666
progress 70% @chr14:76000001, elapsed 37.3s, est remaining 16.0s, peak mem 5068MB, user 1104.7s, sys 11.8s, output queue size 827
progress 75% @chr16:42000001, elapsed 40.8s, est remaining 13.6s, peak mem 5223MB, user 1199.1s, sys 12.2s, output queue size 989
progress 80% @chr18:27000001, elapsed 45.9s, est remaining 11.5s, peak mem 5399MB, user 1326.9s, sys 13.0s, output queue size 1151
progress 85% @chr20:33000001, elapsed 50.7s, est remaining 9.0s, peak mem 5605MB, user 1506.8s, sys 13.9s, output queue size 352
progress 90% @chrX:34000001, elapsed 54.4s, est remaining 6.0s, peak mem 5855MB, user 1626.4s, sys 14.6s, output queue size 513
progress 95% @chrY:52000001, elapsed 56.2s, est remaining 3.0s, peak mem 5921MB, user 1680.3s, sys 15.1s, output queue size 675
progress 100% @chr15:88000001, elapsed 61.6s, est remaining 0.0s, peak mem 5921MB, user 1764.8s, sys 15.6s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 41196981261
reads: 815252332
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 658.712 user 13.449 sys 675.596 real
done: 1 calls 0.269 user 0.038 sys 0.317 real
exec_no_coor: 1 calls 0.008 user 0.008 sys 0.029 real
execute: 1 calls 0.004 user 0.003 sys 61.726 real
idle: 207 calls 0.155 user 0.001 sys 169.551 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6209134592 mem 1766.569 user 15.998 sys 63.549 real