File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/53/8b8f46073912118e60349a3e8978a1/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 44677011
total bases: 6746228661
Q20 bases: 6551964485(97.1204%)
Q30 bases: 6294708534(93.3071%)
Q40 bases: 6294708534(93.3071%)

Read2 before filtering:
total reads: 44677011
total bases: 6746228661
Q20 bases: 6574237368(97.4506%)
Q30 bases: 6289215797(93.2257%)
Q40 bases: 6289215797(93.2257%)

Read1 after filtering:
total reads: 44347440
total bases: 5788258336
Q20 bases: 5705779303(98.5751%)
Q30 bases: 5524169968(95.4375%)
Q40 bases: 5524169968(95.4375%)

Read2 after filtering:
total reads: 44347440
total bases: 5789684109
Q20 bases: 5703899287(98.5183%)
Q30 bases: 5521014080(95.3595%)
Q40 bases: 5521014080(95.3595%)

Filtering result:
reads passed filter: 88694880
reads failed due to low quality: 643592
reads failed due to too many N: 13066
reads failed due to too short: 2484
reads with adapter trimmed: 45730669
bases trimmed due to adapters: 1820941583

Duplication rate: 9.32273%

Insert size peak (evaluated by paired-end reads): 111

JSON report: 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L002_R1_001.fastq.gz --in2 1029_IWL-T1-TDNA-1_A23MHWWLT4_1_S7_L002_R2_001.fastq.gz --out1 1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_IWL-T1-TDNA-1_A23MHWWLT4_1/1029_IWL-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 410 seconds