File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ae/942d481e51bb0907932748f2234c24/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_N5D-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 6.9s, est remaining 130.7s, peak mem 5318MB, user 149.5s, sys 5.7s, output queue size 150
progress 10% @chr2:90000001, elapsed 12.3s, est remaining 110.8s, peak mem 6786MB, user 333.2s, sys 10.5s, output queue size 117
progress 15% @chr2:201000001, elapsed 18.4s, est remaining 104.2s, peak mem 11382MB, user 514.7s, sys 13.5s, output queue size 203
progress 20% @chr3:176000001, elapsed 23.5s, est remaining 94.2s, peak mem 12818MB, user 656.2s, sys 15.2s, output queue size 364
progress 25% @chr4:135000001, elapsed 27.7s, est remaining 83.0s, peak mem 12941MB, user 801.3s, sys 19.2s, output queue size 302
progress 30% @chr5:107000001, elapsed 31.0s, est remaining 72.3s, peak mem 13304MB, user 890.3s, sys 20.2s, output queue size 464
progress 35% @chr6:81000001, elapsed 36.1s, est remaining 67.1s, peak mem 13328MB, user 1026.2s, sys 21.8s, output queue size 625
progress 40% @chr7:67000001, elapsed 41.8s, est remaining 62.7s, peak mem 13328MB, user 1205.3s, sys 23.4s, output queue size 197
progress 45% @chr8:74000001, elapsed 47.7s, est remaining 58.3s, peak mem 13907MB, user 1383.8s, sys 25.1s, output queue size 356
progress 50% @chr9:81000001, elapsed 52.6s, est remaining 52.6s, peak mem 14144MB, user 1521.2s, sys 26.3s, output queue size 366
progress 55% @chr10:99000001, elapsed 58.6s, est remaining 48.0s, peak mem 14669MB, user 1707.5s, sys 28.0s, output queue size 400
progress 60% @chr12:5000001, elapsed 64.7s, est remaining 43.1s, peak mem 14669MB, user 1894.3s, sys 29.6s, output queue size 562
progress 65% @chr13:39000001, elapsed 71.0s, est remaining 38.2s, peak mem 14729MB, user 2034.1s, sys 30.9s, output queue size 724
progress 70% @chr14:35000001, elapsed 74.6s, est remaining 32.0s, peak mem 14829MB, user 2180.7s, sys 32.2s, output queue size 885
progress 75% @chr16:42000001, elapsed 81.3s, est remaining 27.1s, peak mem 14829MB, user 2408.8s, sys 34.1s, output queue size 461
progress 80% @chr17:68000001, elapsed 91.1s, est remaining 22.8s, peak mem 14829MB, user 2674.9s, sys 36.2s, output queue size 623
progress 85% @chr19:40000001, elapsed 99.9s, est remaining 17.6s, peak mem 14829MB, user 2963.4s, sys 38.2s, output queue size 785
progress 90% @chrX:36000001, elapsed 105.4s, est remaining 11.7s, peak mem 15015MB, user 3159.2s, sys 39.5s, output queue size 513
progress 95% @chrY:53000001, elapsed 108.5s, est remaining 5.7s, peak mem 15077MB, user 3239.5s, sys 40.1s, output queue size 675
progress 100% @chr15:88000001, elapsed 120.9s, est remaining 0.0s, peak mem 15077MB, user 3400.2s, sys 41.1s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 108867292734
reads: 2060211395
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1668.977 user 36.966 sys 1706.502 real
done: 1 calls 0.000 user 0.009 sys 0.012 real
exec_no_coor: 1 calls 0.007 user 0.015 sys 0.038 real
execute: 1 calls 0.004 user 0.003 sys 120.934 real
idle: 373 calls 0.151 user 0.001 sys 336.352 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 15810134016 mem 3401.270 user 41.376 sys 122.283 real