Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/45817a719855473da3a73753e94436/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/17f952c7b083c9b7afbbe37bd564e3/1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/75/17f952c7b083c9b7afbbe37bd564e3/1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/45817a719855473da3a73753e94436/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_86S-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_86S-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:178000001, elapsed 4.7s, est remaining 88.7s, peak mem 3701MB, user 108.8s, sys 3.3s, output queue size 146
progress 10% @chr2:70000001, elapsed 8.5s, est remaining 76.6s, peak mem 4589MB, user 230.0s, sys 5.6s, output queue size 96
progress 15% @chr2:214000001, elapsed 13.0s, est remaining 73.4s, peak mem 6206MB, user 356.8s, sys 10.2s, output queue size 188
progress 20% @chr3:176000001, elapsed 16.6s, est remaining 66.5s, peak mem 6481MB, user 473.1s, sys 11.8s, output queue size 174
progress 25% @chr4:129000001, elapsed 20.0s, est remaining 59.9s, peak mem 6481MB, user 575.8s, sys 13.3s, output queue size 302
progress 30% @chr5:44000001, elapsed 22.5s, est remaining 52.6s, peak mem 6626MB, user 656.3s, sys 14.3s, output queue size 464
progress 35% @chr6:80000001, elapsed 26.3s, est remaining 48.9s, peak mem 6783MB, user 753.6s, sys 15.3s, output queue size 625
progress 40% @chr7:66000001, elapsed 30.6s, est remaining 45.9s, peak mem 7320MB, user 870.3s, sys 16.4s, output queue size 786
progress 45% @chr8:79000001, elapsed 35.4s, est remaining 43.2s, peak mem 7336MB, user 1013.1s, sys 17.6s, output queue size 948
progress 50% @chr9:88000001, elapsed 39.2s, est remaining 39.2s, peak mem 7407MB, user 1136.4s, sys 18.6s, output queue size 366
progress 55% @chr10:101000001, elapsed 43.7s, est remaining 35.8s, peak mem 7640MB, user 1273.0s, sys 19.7s, output queue size 527
progress 60% @chr12:1000001, elapsed 48.1s, est remaining 32.0s, peak mem 7640MB, user 1409.1s, sys 20.8s, output queue size 510
progress 65% @chr12:113000001, elapsed 52.8s, est remaining 28.4s, peak mem 7640MB, user 1545.7s, sys 21.6s, output queue size 672
progress 70% @chr14:79000001, elapsed 56.0s, est remaining 24.0s, peak mem 7709MB, user 1635.2s, sys 22.6s, output queue size 833
progress 75% @chr16:42000001, elapsed 61.2s, est remaining 20.4s, peak mem 7823MB, user 1788.6s, sys 23.9s, output queue size 995
progress 80% @chr17:65000001, elapsed 67.8s, est remaining 16.9s, peak mem 7903MB, user 1996.8s, sys 25.6s, output queue size 623
progress 85% @chr19:42000001, elapsed 73.2s, est remaining 12.9s, peak mem 7903MB, user 2163.0s, sys 26.8s, output queue size 785
progress 90% @chr21:10000001, elapsed 76.9s, est remaining 8.5s, peak mem 7983MB, user 2285.7s, sys 27.5s, output queue size 947
progress 95% @chrY:17000001, elapsed 79.0s, est remaining 4.2s, peak mem 7992MB, user 2336.2s, sys 28.0s, output queue size 1109
progress 100% @chr15:88000001, elapsed 89.0s, est remaining 0.0s, peak mem 8128MB, user 2473.0s, sys 29.0s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 69197258666
reads: 1424902378
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1105.395 user 23.629 sys 1131.586 real
done: 1 calls 0.025 user 0.006 sys 0.041 real
exec_no_coor: 1 calls 0.000 user 0.017 sys 0.033 real
execute: 1 calls 0.002 user 0.002 sys 89.026 real
idle: 306 calls 0.140 user 0.001 sys 286.575 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8526180352 mem 2473.943 user 29.206 sys 90.315 real