File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/e90c80b4b27ae93f867046212add57/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_Kh-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_Kh-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 3.5s, est remaining 66.2s, peak mem 3257MB, user 81.2s, sys 3.1s, output queue size 146
progress 10% @chr2:94000001, elapsed 6.4s, est remaining 57.9s, peak mem 4401MB, user 168.8s, sys 5.0s, output queue size 117
progress 15% @chr3:18000001, elapsed 9.6s, est remaining 54.6s, peak mem 6289MB, user 260.9s, sys 6.6s, output queue size 203
progress 20% @chr3:178000001, elapsed 12.7s, est remaining 50.8s, peak mem 7690MB, user 353.2s, sys 8.2s, output queue size 364
progress 25% @chr4:98000001, elapsed 15.1s, est remaining 45.3s, peak mem 8305MB, user 424.7s, sys 10.2s, output queue size 525
progress 30% @chr5:94000001, elapsed 16.9s, est remaining 39.5s, peak mem 8380MB, user 485.6s, sys 13.4s, output queue size 464
progress 35% @chr6:86000001, elapsed 19.6s, est remaining 36.4s, peak mem 8575MB, user 560.5s, sys 14.7s, output queue size 625
progress 40% @chr7:64000001, elapsed 22.4s, est remaining 33.5s, peak mem 8575MB, user 628.2s, sys 15.5s, output queue size 786
progress 45% @chr8:82000001, elapsed 25.7s, est remaining 31.4s, peak mem 8689MB, user 726.9s, sys 16.6s, output queue size 948
progress 50% @chr9:42000001, elapsed 29.2s, est remaining 29.2s, peak mem 9006MB, user 837.0s, sys 17.8s, output queue size 366
progress 55% @chr10:101000001, elapsed 32.6s, est remaining 26.6s, peak mem 9137MB, user 948.9s, sys 18.9s, output queue size 527
progress 60% @chr12:2000001, elapsed 35.5s, est remaining 23.7s, peak mem 9137MB, user 1040.9s, sys 19.6s, output queue size 510
progress 65% @chr13:23000001, elapsed 39.0s, est remaining 21.0s, peak mem 9137MB, user 1138.4s, sys 20.3s, output queue size 672
progress 70% @chr14:69000001, elapsed 40.9s, est remaining 17.5s, peak mem 9155MB, user 1187.6s, sys 20.7s, output queue size 833
progress 75% @chr16:41000001, elapsed 44.7s, est remaining 14.9s, peak mem 9155MB, user 1308.7s, sys 21.5s, output queue size 797
progress 80% @chr18:29000001, elapsed 49.7s, est remaining 12.4s, peak mem 9165MB, user 1442.8s, sys 22.6s, output queue size 623
progress 85% @chr20:43000001, elapsed 54.4s, est remaining 9.6s, peak mem 9217MB, user 1596.4s, sys 23.5s, output queue size 785
progress 90% @chrX:38000001, elapsed 57.2s, est remaining 6.4s, peak mem 9539MB, user 1683.1s, sys 24.2s, output queue size 947
progress 95% @chrY:53000001, elapsed 59.0s, est remaining 3.1s, peak mem 9646MB, user 1735.2s, sys 24.7s, output queue size 1109
progress 100% @chrX:67000001, elapsed 86.8s, est remaining 0.0s, peak mem 10060MB, user 1869.7s, sys 25.9s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 62489204264
reads: 1154230309
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 943.994 user 22.575 sys 967.423 real
done: 1 calls 0.000 user 0.000 sys 0.003 real
exec_no_coor: 1 calls 0.010 user 0.000 sys 0.019 real
execute: 1 calls 0.001 user 0.000 sys 86.829 real
idle: 845 calls 0.188 user 0.002 sys 825.218 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 10549604352 mem 1870.766 user 26.160 sys 88.224 real