File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b0/4a1a16a510a023d1280a70f11cfc40/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1047_JG-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1047_JG-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:187000001, elapsed 11.1s, est remaining 210.9s, peak mem 7792MB, user 272.3s, sys 13.0s, output queue size 58
progress 10% @chr2:90000001, elapsed 20.2s, est remaining 182.2s, peak mem 8885MB, user 543.6s, sys 19.2s, output queue size 96
progress 15% @chr2:232000001, elapsed 31.0s, est remaining 175.4s, peak mem 12800MB, user 859.9s, sys 28.4s, output queue size 122
progress 20% @chr3:178000001, elapsed 39.8s, est remaining 159.2s, peak mem 12985MB, user 1125.3s, sys 32.3s, output queue size 174
progress 25% @chr4:80000001, elapsed 47.8s, est remaining 143.5s, peak mem 13342MB, user 1382.8s, sys 35.1s, output queue size 302
progress 30% @chr5:106000001, elapsed 54.0s, est remaining 126.0s, peak mem 13906MB, user 1560.6s, sys 36.6s, output queue size 464
progress 35% @chr6:86000001, elapsed 62.9s, est remaining 116.8s, peak mem 14075MB, user 1806.6s, sys 39.4s, output queue size 625
progress 40% @chr6:156000001, elapsed 72.8s, est remaining 109.2s, peak mem 14099MB, user 2089.3s, sys 41.8s, output queue size 786
progress 45% @chr7:106000001, elapsed 84.0s, est remaining 102.7s, peak mem 14326MB, user 2457.5s, sys 44.3s, output queue size 204
progress 50% @chr9:35000001, elapsed 93.8s, est remaining 93.8s, peak mem 14985MB, user 2701.8s, sys 46.5s, output queue size 366
progress 55% @chr10:103000001, elapsed 103.9s, est remaining 85.0s, peak mem 14985MB, user 3024.1s, sys 49.3s, output queue size 527
progress 60% @chr11:134000001, elapsed 114.3s, est remaining 76.2s, peak mem 14985MB, user 3339.9s, sys 51.3s, output queue size 689
progress 65% @chr12:106000001, elapsed 125.6s, est remaining 67.6s, peak mem 15120MB, user 3675.5s, sys 53.6s, output queue size 672
progress 70% @chr14:24000001, elapsed 132.3s, est remaining 56.7s, peak mem 15120MB, user 3850.5s, sys 54.7s, output queue size 833
progress 75% @chr16:42000001, elapsed 143.5s, est remaining 47.8s, peak mem 15203MB, user 4198.6s, sys 56.7s, output queue size 995
progress 80% @chr18:25000001, elapsed 159.3s, est remaining 39.8s, peak mem 15452MB, user 4684.1s, sys 59.5s, output queue size 623
progress 85% @chr19:42000001, elapsed 173.1s, est remaining 30.6s, peak mem 15452MB, user 5126.5s, sys 62.5s, output queue size 785
progress 90% @chrX:30000001, elapsed 182.1s, est remaining 20.2s, peak mem 15452MB, user 5467.6s, sys 64.4s, output queue size 513
progress 95% @chrY:54000001, elapsed 189.0s, est remaining 9.9s, peak mem 15452MB, user 5639.5s, sys 65.9s, output queue size 675
progress 100% @chrX:67000001, elapsed 210.6s, est remaining 0.0s, peak mem 15622MB, user 5927.9s, sys 67.7s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 140423331250
reads: 3098808471
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 2368.303 user 61.230 sys 2429.771 real
done: 1 calls 0.008 user 0.008 sys 0.019 real
exec_no_coor: 1 calls 0.019 user 0.106 sys 0.154 real
execute: 1 calls 0.002 user 0.001 sys 210.622 real
idle: 595 calls 0.149 user 0.002 sys 561.136 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 16381173760 mem 5928.904 user 68.169 sys 212.205 real