File Info

Filename
control_metrics.json
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/00/1b2b9e06a06d8b29aeaf27909669f6/control_metrics.json
Size
5.0 KB
Attempt
[
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "cnv",
    "qc_metric_name": "positive_somatic_control_cnv_amp_missed",
    "qc_value": "NONE"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "cnv",
    "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_copy_numbers",
    "qc_value": "MYCN=23,MET=10"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "cnv",
    "qc_metric_name": "positive_somatic_control_cnv_amp_recovered_count",
    "qc_value": "2"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "cnv",
    "qc_metric_name": "positive_somatic_control_cnv_amp_truth_total",
    "qc_value": "2"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "cnv",
    "qc_metric_name": "positive_somatic_control_cnv_segment_count",
    "qc_value": "287"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "mimsi",
    "qc_metric_name": "positive_somatic_control_mimsi_lci",
    "qc_value": "0.9999837049006565"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "mimsi",
    "qc_metric_name": "positive_somatic_control_mimsi_max_msi_score",
    "qc_value": "0.9999867677688599"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "mimsi",
    "qc_metric_name": "positive_somatic_control_mimsi_mean_msi_score",
    "qc_value": "0.9999845385551452"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "mimsi",
    "qc_metric_name": "positive_somatic_control_mimsi_min_msi_score",
    "qc_value": "0.9999828338623047"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "mimsi",
    "qc_metric_name": "positive_somatic_control_mimsi_msi_status",
    "qc_value": "MSI-H"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "mimsi",
    "qc_metric_name": "positive_somatic_control_mimsi_uci",
    "qc_value": "0.999985372209634"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "msi",
    "qc_metric_name": "positive_somatic_control_msi_total_sites",
    "qc_value": "178"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "msi",
    "qc_metric_name": "positive_somatic_control_msi_unstable_pct",
    "qc_value": "100.00"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "msi",
    "qc_metric_name": "positive_somatic_control_msi_unstable_sites",
    "qc_value": "178"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "snv_indel",
    "qc_metric_name": "positive_somatic_control_snv_indel_coa_missed_variants",
    "qc_value": "163343;177678"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "snv_indel",
    "qc_metric_name": "positive_somatic_control_snv_indel_coa_recovered_count",
    "qc_value": "3"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "snv_indel",
    "qc_metric_name": "positive_somatic_control_snv_indel_coa_truth_total",
    "qc_value": "5"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "snv_indel",
    "qc_metric_name": "positive_somatic_control_snv_indel_indel_count",
    "qc_value": "5630"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "snv_indel",
    "qc_metric_name": "positive_somatic_control_snv_indel_snv_count",
    "qc_value": "36016"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "tmb",
    "qc_metric_name": "positive_somatic_control_tmb_effective_coding_region_size",
    "qc_value": "34.15"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "tmb",
    "qc_metric_name": "positive_somatic_control_tmb_non_synonymous_count",
    "qc_value": "10643"
  },
  {
    "control_type": "positive_somatic",
    "sample_id": "FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1",
    "variant_type": "tmb",
    "qc_metric_name": "positive_somatic_control_tmb_score",
    "qc_value": "311.6581"
  }
]