Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/982bf300f65e2fb661cecb02f6e305/1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/5c47826224d41bf8f3f6c6df8163d5/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/a2/982bf300f65e2fb661cecb02f6e305/1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d8/5c47826224d41bf8f3f6c6df8163d5/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_noncoding_postQC_hg38.bed
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_N5D-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_N5D-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 7.0s, est remaining 133.6s, peak mem 5455MB, user 156.1s, sys 7.1s, output queue size 146
progress 10% @chr2:58000001, elapsed 12.3s, est remaining 111.0s, peak mem 7467MB, user 331.9s, sys 12.2s, output queue size 117
progress 15% @chr2:201000001, elapsed 18.0s, est remaining 102.0s, peak mem 11395MB, user 496.7s, sys 14.9s, output queue size 203
progress 20% @chr3:165000001, elapsed 23.2s, est remaining 92.7s, peak mem 12998MB, user 643.9s, sys 16.7s, output queue size 364
progress 25% @chr4:124000001, elapsed 27.4s, est remaining 82.1s, peak mem 13322MB, user 791.0s, sys 20.4s, output queue size 302
progress 30% @chr5:100000001, elapsed 30.7s, est remaining 71.7s, peak mem 13363MB, user 881.6s, sys 21.1s, output queue size 464
progress 35% @chr6:91000001, elapsed 36.0s, est remaining 66.8s, peak mem 13810MB, user 1020.2s, sys 22.3s, output queue size 625
progress 40% @chr7:66000001, elapsed 41.9s, est remaining 62.8s, peak mem 14722MB, user 1177.7s, sys 23.8s, output queue size 786
progress 45% @chr8:78000001, elapsed 48.1s, est remaining 58.8s, peak mem 15906MB, user 1396.4s, sys 25.9s, output queue size 356
progress 50% @chr9:102000001, elapsed 53.1s, est remaining 53.1s, peak mem 16176MB, user 1533.7s, sys 27.3s, output queue size 366
progress 55% @chr10:73000001, elapsed 59.5s, est remaining 48.7s, peak mem 16835MB, user 1711.0s, sys 29.0s, output queue size 485
progress 60% @chr11:134000001, elapsed 65.6s, est remaining 43.7s, peak mem 16835MB, user 1899.7s, sys 30.6s, output queue size 562
progress 65% @chr13:36000001, elapsed 72.1s, est remaining 38.8s, peak mem 16835MB, user 2062.5s, sys 31.9s, output queue size 724
progress 70% @chr13:102000001, elapsed 75.9s, est remaining 32.5s, peak mem 16835MB, user 2187.2s, sys 32.9s, output queue size 885
progress 75% @chr16:42000001, elapsed 82.9s, est remaining 27.6s, peak mem 16835MB, user 2459.4s, sys 34.9s, output queue size 461
progress 80% @chr18:13000001, elapsed 92.7s, est remaining 23.2s, peak mem 16995MB, user 2719.2s, sys 36.6s, output queue size 623
progress 85% @chr19:55000001, elapsed 101.9s, est remaining 18.0s, peak mem 17115MB, user 3000.2s, sys 38.4s, output queue size 785
progress 90% @chrX:20000001, elapsed 107.5s, est remaining 11.9s, peak mem 17124MB, user 3185.7s, sys 39.5s, output queue size 947
progress 95% @chrY:55000001, elapsed 110.8s, est remaining 5.8s, peak mem 17336MB, user 3308.1s, sys 40.3s, output queue size 675
progress 100% @chr15:88000001, elapsed 127.4s, est remaining 0.0s, peak mem 17336MB, user 3477.0s, sys 41.3s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 108867292734
reads: 2060211395
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1671.220 user 36.333 sys 1713.018 real
done: 1 calls 0.015 user 0.076 sys 0.098 real
exec_no_coor: 1 calls 0.011 user 0.012 sys 0.036 real
execute: 1 calls 0.003 user 0.001 sys 127.416 real
idle: 496 calls 0.201 user 0.002 sys 461.993 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 18178449408 mem 3478.138 user 41.605 sys 128.769 real