File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/0fd212af781e8aa57d3bbeda2cc6ce/.command.err
Size
60.0 KB
Task
DAQ:CONTROL_VARIANT_CALLING:CONTROL_SOMATIC_VC:BAM_VARIANT_CALLING_SOMATIC_STRELKA:STRELKA_SOMATIC (positive_somatic_control_1;chr9_110971973-110972217.bed)
Attempt

Content

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[2026-06-06T01:01:44.367147Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-06T01:01:44.369357Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-06T01:01:44.369373Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-06T01:01:44.369377Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-06T01:01:44.369381Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXVRWZuU'
[2026-06-06T01:01:44.369386Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-06T01:01:44.369390Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-06T01:01:44.369394Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-06T01:01:44.369398Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-06T01:01:44.369401Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-06T01:01:44.369405Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-06T01:01:44.369409Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-06T01:01:44.369412Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-06T01:01:44.369416Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-06T01:01:44.370099Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-06T01:01:44.370229Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-06T01:01:44.376020Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-06T01:01:44.376748Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-06T01:01:44.376938Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-06T01:01:44.377134Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-06T01:01:44.377495Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.378240Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.378333Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.378403Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.378517Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.378660Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.379071Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.379169Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.379338Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.379464Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.379542Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.380283Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.380540Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.381561Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.382224Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.382649Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-06T01:01:44.383178Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.383374Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.383492Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.383559Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.383768Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.383838Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.383952Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.384020Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.384130Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.384191Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.384725Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.384866Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.385171Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.385469Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.385859Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.385930Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386093Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386157Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386266Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386330Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386440Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386502Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386617Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386678Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386785Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.386903Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.387181Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.387517Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.387625Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.387688Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.387799Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.387919Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.388033Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.388099Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.388205Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.388268Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.388377Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.388471Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.388775Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389122Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389238Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389304Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389413Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389475Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389583Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389643Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389754Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389820Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.405188Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.405539Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.405609Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.405767Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.405840Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.405924Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.405995Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.406100Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.406165Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.406211Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-06T01:01:44.408774Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.409523Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.410025Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.410573Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.413377Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.416299Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0002] Task initiated on local node
[2026-06-06T01:01:44.417530Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0012] Task initiated on local node
[2026-06-06T01:01:44.418776Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.419411Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0008] Task initiated on local node
[2026-06-06T01:01:44.420246Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.423278Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0000] Task initiated on local node
[2026-06-06T01:01:44.425125Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.425797Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0011] Task initiated on local node
[2026-06-06T01:01:44.428664Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0000] Task initiated on local node
[2026-06-06T01:01:44.428876Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430841Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0003] Task initiated on local node
[2026-06-06T01:01:44.433230Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0004] Task initiated on local node
[2026-06-06T01:01:44.494452Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.494516Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.494538Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.494560Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.495190Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.495561Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.495903Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.496144Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.500400Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0009] Task initiated on local node
[2026-06-06T01:01:44.501973Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0009] Task initiated on local node
[2026-06-06T01:01:44.503027Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0005] Task initiated on local node
[2026-06-06T01:01:45.212673Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.213610Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.216120Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0000] Task initiated on local node
[2026-06-06T01:01:45.245563Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.246237Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.248730Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_008_chr9_0000] Task initiated on local node
[2026-06-06T01:01:45.310336Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.310992Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:45.313511Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0004] Task initiated on local node
[2026-06-06T01:01:54.815809Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0007] Task initiated on local node
[2026-06-06T01:01:54.836161Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.836261Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.837706Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.837995Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.840599Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0007] Task initiated on local node
[2026-06-06T01:01:54.841679Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0005] Task initiated on local node
[2026-06-06T01:01:54.902007Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.902074Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.902752Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.904250Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.905856Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0004] Task initiated on local node
[2026-06-06T01:01:54.906999Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0003] Task initiated on local node
[2026-06-06T01:01:54.936737Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.936811Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.937381Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.937658Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:54.940489Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0002] Task initiated on local node
[2026-06-06T01:01:54.941462Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0000] Task initiated on local node
[2026-06-06T01:01:56.004458Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.005162Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.008145Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0004] Task initiated on local node
[2026-06-06T01:01:56.169676Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.170324Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.172771Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0008] Task initiated on local node
[2026-06-06T01:01:56.202513Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.203130Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.205699Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0002] Task initiated on local node
[2026-06-06T01:01:56.267236Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.267849Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.270234Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0002] Task initiated on local node
[2026-06-06T01:01:56.299663Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.300259Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.302582Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0000] Task initiated on local node
[2026-06-06T01:01:56.364435Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.365014Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.367425Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0004] Task initiated on local node
[2026-06-06T01:01:56.397093Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.397670Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:01:56.400072Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0010] Task initiated on local node
[2026-06-06T01:01:58.816761Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:58.817499Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:58.820479Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0002] Task initiated on local node
[2026-06-06T01:01:58.849631Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:58.850229Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:01:58.852924Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0008] Task initiated on local node
[2026-06-06T01:02:00.718647Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:00.719281Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:02:00.721915Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0010] Task initiated on local node
[2026-06-06T01:02:01.334563Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.335241Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.338075Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0005] Task initiated on local node
[2026-06-06T01:02:01.399839Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.400452Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.402878Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0003] Task initiated on local node
[2026-06-06T01:02:01.464403Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.464992Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.467168Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0003] Task initiated on local node
[2026-06-06T01:02:01.496760Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.497309Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:01.499822Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_023_chrY_0001] Task initiated on local node
[2026-06-06T01:02:03.164657Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:03.165322Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:02:03.168363Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0007] Task initiated on local node
[2026-06-06T01:02:03.229981Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:03.230547Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:02:03.233317Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0013] Task initiated on local node
[2026-06-06T01:02:17.405585Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.406693Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.409267Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0012] Task initiated on local node
[2026-06-06T01:02:17.470885Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0012' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.471431Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.474142Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0009] Task initiated on local node
[2026-06-06T01:02:17.535632Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.536108Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:02:17.538711Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0003] Task initiated on local node
[2026-06-06T01:02:22.901570Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:22.902213Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:02:22.904696Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0010] Task initiated on local node
[2026-06-06T01:02:22.967476Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:22.968003Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:02:22.970597Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0002] Task initiated on local node
[2026-06-06T01:02:22.999818Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:23.000335Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:02:23.002955Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0011] Task initiated on local node
[2026-06-06T01:02:28.767171Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.767742Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.770313Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0005] Task initiated on local node
[2026-06-06T01:02:28.799845Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.800363Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.802970Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0001] Task initiated on local node
[2026-06-06T01:02:28.864342Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.864866Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.867213Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_023_chrY_0001] Task initiated on local node
[2026-06-06T01:02:28.896771Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_023_chrY_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.897269Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.899488Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0007] Task initiated on local node
[2026-06-06T01:02:28.929239Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.929722Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.932251Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0010] Task initiated on local node
[2026-06-06T01:02:28.993753Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0010' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.994248Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:28.996575Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0001] Task initiated on local node
[2026-06-06T01:02:29.026100Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.026560Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.029161Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_008_chr9_0006] Task initiated on local node
[2026-06-06T01:02:29.090649Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.091142Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.093404Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0006] Task initiated on local node
[2026-06-06T01:02:29.123171Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.123640Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.126022Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0008] Task initiated on local node
[2026-06-06T01:02:29.156806Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0008' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.157249Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:29.159413Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0001] Task initiated on local node
[2026-06-06T01:02:33.631920Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:33.632545Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:02:33.635273Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0000] Task initiated on local node
[2026-06-06T01:02:33.696572Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:33.697055Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:02:33.699535Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_022_chrX_0006] Task initiated on local node
[2026-06-06T01:02:56.069604Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:56.070521Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:02:56.073431Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0003] Task initiated on local node
[2026-06-06T01:02:56.102495Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.570336Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.570845Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.573579Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0013] Task initiated on local node
[2026-06-06T01:02:57.634716Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0013' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:19.104163Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:19.105251Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' from sub-workflow 'CallGenome'
[2026-06-06T01:03:19.107904Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0009] Task initiated on local node
[2026-06-06T01:03:19.121114Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:19.121553Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:03:19.123848Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0001] Task initiated on local node
[2026-06-06T01:03:19.153393Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0009' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:19.154011Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:50.773522Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:50.774535Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:03:50.777026Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0004] Task initiated on local node
[2026-06-06T01:03:50.838515Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:03.610446Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:03.611405Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:04:03.614203Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0011] Task initiated on local node
[2026-06-06T01:04:03.675449Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:30.757767Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:30.758695Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' from sub-workflow 'CallGenome'
[2026-06-06T01:06:30.761274Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_008_chr9_0011] Task initiated on local node
[2026-06-06T01:06:30.822618Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_008_chr9_0011' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.142175Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.143091Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.146403Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_022_chrX_0006] Task initiated on local node
[2026-06-06T01:07:31.207514Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_022_chrX_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.207784Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.207924Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.208363Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.208757Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.212530Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-06T01:07:31.214659Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-06T01:07:31.243422Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-06T01:07:31.273287Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.273346Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.273369Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.273574Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.273869Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.276661Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-06T01:07:31.277368Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-06T01:07:31.337894Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.337950Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.338138Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:07:31.340283Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-06T01:07:31.369913Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:32.836200Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-06T01:07:47.792091Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-06T01:07:47.792091Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] 
[2026-06-06T01:07:47.792091Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-06T01:07:47.792164Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] 
[2026-06-06T01:07:47.792172Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-06T01:07:47.792178Z] [nf-cb0fd212af781e8aa57d3bbeda2cc6ce-3ebad-2qlz4] [597_1] [WorkflowRunner] Elapsed time for full workflow: 363 sec