Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/a526878474576ee3a918f14cd7a1cc/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/ef37e6069f2668d49419f98ecb4969/1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/altera_v3_targets_postQC_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/12/a526878474576ee3a918f14cd7a1cc/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/ef37e6069f2668d49419f98ecb4969/1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4ZB-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:160000001, elapsed 2.9s, est remaining 55.3s, peak mem 2226MB, user 65.3s, sys 1.7s, output queue size 146
progress 10% @chr2:38000001, elapsed 5.2s, est remaining 46.9s, peak mem 3028MB, user 140.2s, sys 3.0s, output queue size 117
progress 15% @chr2:47000001, elapsed 7.7s, est remaining 43.5s, peak mem 3597MB, user 217.5s, sys 4.2s, output queue size 188
progress 20% @chr3:167000001, elapsed 9.8s, est remaining 39.1s, peak mem 3726MB, user 283.2s, sys 4.8s, output queue size 141
progress 25% @chr4:135000001, elapsed 11.6s, est remaining 34.9s, peak mem 3905MB, user 338.0s, sys 5.5s, output queue size 302
progress 30% @chr5:106000001, elapsed 13.1s, est remaining 30.5s, peak mem 3918MB, user 377.2s, sys 5.9s, output queue size 464
progress 35% @chr6:79000001, elapsed 14.7s, est remaining 27.3s, peak mem 3918MB, user 429.1s, sys 6.4s, output queue size 625
progress 40% @chr6:117000001, elapsed 17.0s, est remaining 25.6s, peak mem 4161MB, user 492.3s, sys 7.1s, output queue size 786
progress 45% @chr8:78000001, elapsed 20.0s, est remaining 24.4s, peak mem 4718MB, user 580.4s, sys 7.9s, output queue size 393
progress 50% @chr9:87000001, elapsed 21.9s, est remaining 21.9s, peak mem 4890MB, user 632.5s, sys 8.5s, output queue size 366
progress 55% @chr10:103000001, elapsed 24.2s, est remaining 19.8s, peak mem 4983MB, user 703.3s, sys 9.3s, output queue size 527
progress 60% @chr12:5000001, elapsed 26.5s, est remaining 17.7s, peak mem 4983MB, user 758.1s, sys 9.7s, output queue size 689
progress 65% @chr13:36000001, elapsed 29.1s, est remaining 15.7s, peak mem 5121MB, user 844.7s, sys 10.3s, output queue size 809
progress 70% @chr14:71000001, elapsed 30.7s, est remaining 13.1s, peak mem 5229MB, user 906.9s, sys 10.9s, output queue size 827
progress 75% @chr16:42000001, elapsed 33.5s, est remaining 11.2s, peak mem 5243MB, user 980.4s, sys 11.4s, output queue size 989
progress 80% @chr18:29000001, elapsed 37.4s, est remaining 9.3s, peak mem 5296MB, user 1082.1s, sys 12.0s, output queue size 1151
progress 85% @chr20:33000001, elapsed 41.0s, est remaining 7.2s, peak mem 5382MB, user 1185.0s, sys 12.8s, output queue size 1313
progress 90% @chrX:42000001, elapsed 44.0s, est remaining 4.9s, peak mem 5655MB, user 1315.0s, sys 13.5s, output queue size 513
progress 95% @chrY:52000001, elapsed 45.5s, est remaining 2.4s, peak mem 5668MB, user 1359.1s, sys 13.9s, output queue size 675
progress 100% @chr15:88000001, elapsed 53.5s, est remaining 0.0s, peak mem 5670MB, user 1432.8s, sys 14.5s, output queue size 4099
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 41196981261
reads: 815252332
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 648.487 user 12.097 sys 662.033 real
done: 1 calls 0.020 user 0.020 sys 0.044 real
exec_no_coor: 1 calls 0.011 user 0.000 sys 0.018 real
execute: 1 calls 0.003 user 0.002 sys 53.526 real
idle: 272 calls 0.158 user 0.001 sys 241.624 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 5946404864 mem 1433.882 user 14.658 sys 54.801 real