File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/0dcec37d46ab66dec80788d870fdaa/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:188000001, elapsed 4.4s, est remaining 84.4s, peak mem 3539MB, user 102.5s, sys 2.8s, output queue size 146
progress 10% @chr2:46000001, elapsed 8.1s, est remaining 72.6s, peak mem 4623MB, user 218.1s, sys 5.2s, output queue size 117
progress 15% @chr2:214000001, elapsed 11.9s, est remaining 67.3s, peak mem 6778MB, user 332.4s, sys 6.9s, output queue size 203
progress 20% @chr3:167000001, elapsed 15.3s, est remaining 61.4s, peak mem 6804MB, user 443.5s, sys 8.9s, output queue size 141
progress 25% @chr4:135000001, elapsed 18.3s, est remaining 54.9s, peak mem 6804MB, user 533.9s, sys 9.7s, output queue size 302
progress 30% @chr5:101000001, elapsed 20.7s, est remaining 48.4s, peak mem 6804MB, user 609.3s, sys 10.4s, output queue size 464
progress 35% @chr6:79000001, elapsed 24.3s, est remaining 45.0s, peak mem 6804MB, user 699.0s, sys 11.3s, output queue size 625
progress 40% @chr7:47000001, elapsed 28.2s, est remaining 42.3s, peak mem 6952MB, user 814.8s, sys 12.4s, output queue size 786
progress 45% @chr8:78000001, elapsed 32.5s, est remaining 39.7s, peak mem 7424MB, user 952.7s, sys 13.5s, output queue size 204
progress 50% @chr8:144000001, elapsed 36.3s, est remaining 36.3s, peak mem 8087MB, user 1050.2s, sys 14.4s, output queue size 366
progress 55% @chr10:118000001, elapsed 40.9s, est remaining 33.4s, peak mem 8363MB, user 1188.7s, sys 15.7s, output queue size 527
progress 60% @chr11:130000001, elapsed 45.1s, est remaining 30.1s, peak mem 8363MB, user 1335.6s, sys 16.9s, output queue size 510
progress 65% @chr13:23000001, elapsed 49.0s, est remaining 26.4s, peak mem 8363MB, user 1457.1s, sys 17.7s, output queue size 474
progress 70% @chr14:35000001, elapsed 51.7s, est remaining 22.2s, peak mem 8363MB, user 1533.4s, sys 18.2s, output queue size 635
progress 75% @chr16:42000001, elapsed 56.2s, est remaining 18.7s, peak mem 8363MB, user 1674.3s, sys 19.3s, output queue size 461
progress 80% @chr18:13000001, elapsed 62.9s, est remaining 15.7s, peak mem 8363MB, user 1853.6s, sys 20.7s, output queue size 623
progress 85% @chr20:25000001, elapsed 68.1s, est remaining 12.0s, peak mem 8363MB, user 2023.3s, sys 21.8s, output queue size 785
progress 90% @chrX:30000001, elapsed 71.9s, est remaining 8.0s, peak mem 8506MB, user 2157.7s, sys 22.7s, output queue size 513
progress 95% @chrY:53000001, elapsed 74.4s, est remaining 3.9s, peak mem 8506MB, user 2228.1s, sys 23.2s, output queue size 675
progress 100% @chr22:23000001, elapsed 80.7s, est remaining 0.0s, peak mem 8506MB, user 2327.2s, sys 23.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 72638040988
reads: 1429869427
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1137.795 user 21.043 sys 1161.541 real
done: 1 calls 0.017 user 0.019 sys 0.038 real
exec_no_coor: 1 calls 0.007 user 0.008 sys 0.029 real
execute: 1 calls 0.007 user 0.002 sys 80.685 real
idle: 214 calls 0.167 user 0.001 sys 180.021 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8919990272 mem 2328.134 user 24.087 sys 81.968 real