cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo AlignmentStat 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.sentieon.alignment_summary_metrics --algo InsertSizeMetricAlgo 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.sentieon.insert_size_metrics --algo QualDistribution 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_distribution_metrics --algo BaseDistributionByCycle 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.sentieon.base_distribution_by_cycle_metrics --algo MeanQualityByCycle 1029_IWL-T1-TDNA-1_A23MHWWLT4_1.sentieon.quality_by_cycle_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:178000001, elapsed 6.2s, est remaining 118.6s, peak mem 1550MB, user 154.1s, sys 1.3s, output queue size 145
progress 10% @chr2:69000001, elapsed 10.6s, est remaining 95.6s, peak mem 1920MB, user 306.0s, sys 2.3s, output queue size 48
progress 15% @chr2:214000001, elapsed 16.0s, est remaining 90.5s, peak mem 2103MB, user 459.5s, sys 3.3s, output queue size 122
progress 20% @chr3:176000001, elapsed 20.6s, est remaining 82.6s, peak mem 2135MB, user 601.3s, sys 3.9s, output queue size 141
progress 25% @chr4:83000001, elapsed 24.7s, est remaining 74.2s, peak mem 2282MB, user 734.1s, sys 4.5s, output queue size 302
progress 30% @chr5:99000001, elapsed 28.1s, est remaining 65.6s, peak mem 2368MB, user 832.6s, sys 4.9s, output queue size 464
progress 35% @chr6:41000001, elapsed 32.9s, est remaining 61.1s, peak mem 2552MB, user 967.0s, sys 5.3s, output queue size 625
progress 40% @chr7:47000001, elapsed 37.9s, est remaining 56.9s, peak mem 2593MB, user 1127.0s, sys 5.9s, output queue size 194
progress 45% @chr8:74000001, elapsed 43.4s, est remaining 53.1s, peak mem 2619MB, user 1289.0s, sys 6.5s, output queue size 204
progress 50% @chr9:81000001, elapsed 48.0s, est remaining 48.0s, peak mem 2685MB, user 1422.3s, sys 6.9s, output queue size 366
progress 55% @chr10:115000001, elapsed 53.6s, est remaining 43.9s, peak mem 2772MB, user 1598.2s, sys 7.4s, output queue size 348
progress 60% @chr12:1000001, elapsed 59.3s, est remaining 39.5s, peak mem 2772MB, user 1768.1s, sys 7.9s, output queue size 510
progress 65% @chr13:33000001, elapsed 64.6s, est remaining 34.8s, peak mem 2784MB, user 1938.8s, sys 8.3s, output queue size 672
progress 70% @chr14:78000001, elapsed 68.3s, est remaining 29.3s, peak mem 2796MB, user 2074.2s, sys 8.7s, output queue size 299
progress 75% @chr16:42000001, elapsed 74.0s, est remaining 24.7s, peak mem 2796MB, user 2225.9s, sys 9.2s, output queue size 461
progress 80% @chr18:29000001, elapsed 83.0s, est remaining 20.7s, peak mem 2846MB, user 2468.6s, sys 9.9s, output queue size 623
progress 85% @chr20:39000001, elapsed 90.5s, est remaining 16.0s, peak mem 2846MB, user 2742.0s, sys 10.5s, output queue size 351
progress 90% @chrX:31000001, elapsed 95.1s, est remaining 10.6s, peak mem 2846MB, user 2904.9s, sys 11.0s, output queue size 78
progress 95% @chrY:55000001, elapsed 98.0s, est remaining 5.2s, peak mem 2846MB, user 2988.5s, sys 11.3s, output queue size 240
progress 100% @chr22:23000001, elapsed 106.4s, est remaining 0.0s, peak mem 2846MB, user 3064.6s, sys 11.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: AlignmentStat InsertSizeMetricAlgo QualDistribution BaseDistributionByCycle MeanQualityByCycle
license: sentieon:Metrics=31
input file size: 34430769148
reads: 702845646
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 565.441 user 9.406 sys 576.061 real
done: 1 calls 0.024 user 0.000 sys 0.033 real
exec_no_coor: 1 calls 0.026 user 0.000 sys 0.038 real
execute: 1 calls 0.002 user 0.002 sys 106.533 real
idle: 280 calls 0.181 user 0.000 sys 252.557 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 2985058304 mem 3066.622 user 11.929 sys 107.610 real