File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/a6d74c8c911c63e8df2219894ad7c4/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_4GR-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_4GR-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 3.3s, est remaining 62.5s, peak mem 2774MB, user 75.2s, sys 2.5s, output queue size 146
progress 10% @chr2:58000001, elapsed 5.8s, est remaining 52.4s, peak mem 3243MB, user 157.4s, sys 4.5s, output queue size 117
progress 15% @chr2:177000001, elapsed 8.6s, est remaining 48.8s, peak mem 4524MB, user 247.0s, sys 6.6s, output queue size 122
progress 20% @chr3:72000001, elapsed 11.1s, est remaining 44.3s, peak mem 4524MB, user 315.2s, sys 7.2s, output queue size 283
progress 25% @chr4:124000001, elapsed 13.0s, est remaining 38.9s, peak mem 4524MB, user 376.9s, sys 8.0s, output queue size 302
progress 30% @chr5:94000001, elapsed 14.5s, est remaining 33.8s, peak mem 4524MB, user 424.4s, sys 8.5s, output queue size 464
progress 35% @chr6:70000001, elapsed 16.9s, est remaining 31.4s, peak mem 4524MB, user 486.2s, sys 9.0s, output queue size 625
progress 40% @chr7:65000001, elapsed 19.7s, est remaining 29.5s, peak mem 4839MB, user 567.9s, sys 9.8s, output queue size 197
progress 45% @chr8:58000001, elapsed 22.6s, est remaining 27.6s, peak mem 4906MB, user 661.7s, sys 10.9s, output queue size 204
progress 50% @chr9:94000001, elapsed 25.5s, est remaining 25.5s, peak mem 5305MB, user 732.1s, sys 11.5s, output queue size 366
progress 55% @chr10:120000001, elapsed 28.6s, est remaining 23.4s, peak mem 5345MB, user 835.7s, sys 12.5s, output queue size 348
progress 60% @chr11:66000001, elapsed 31.6s, est remaining 21.0s, peak mem 5345MB, user 936.3s, sys 13.5s, output queue size 312
progress 65% @chr13:33000001, elapsed 34.7s, est remaining 18.7s, peak mem 5607MB, user 1027.4s, sys 14.4s, output queue size 474
progress 70% @chr14:79000001, elapsed 36.7s, est remaining 15.7s, peak mem 5622MB, user 1095.9s, sys 15.0s, output queue size 299
progress 75% @chr16:42000001, elapsed 39.8s, est remaining 13.3s, peak mem 5622MB, user 1184.0s, sys 15.7s, output queue size 461
progress 80% @chr18:13000001, elapsed 44.7s, est remaining 11.2s, peak mem 5622MB, user 1311.7s, sys 16.6s, output queue size 623
progress 85% @chr19:49000001, elapsed 49.2s, est remaining 8.7s, peak mem 5740MB, user 1471.0s, sys 17.9s, output queue size 351
progress 90% @chrX:34000001, elapsed 52.3s, est remaining 5.8s, peak mem 6030MB, user 1565.6s, sys 18.7s, output queue size 513
progress 95% @chrY:52000001, elapsed 54.0s, est remaining 2.8s, peak mem 6030MB, user 1629.8s, sys 19.2s, output queue size 240
progress 100% @chr22:23000001, elapsed 60.4s, est remaining 0.0s, peak mem 6030MB, user 1687.0s, sys 19.8s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 54881652601
reads: 1048916945
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 850.112 user 16.892 sys 866.375 real
done: 1 calls 0.001 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.011 user 0.000 sys 0.018 real
execute: 1 calls 0.000 user 0.010 sys 60.460 real
idle: 225 calls 0.162 user 0.001 sys 196.689 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 6323863552 mem 1688.061 user 19.969 sys 61.753 real