File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/efd16529d13104243b107dd6dcea07/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (1136_4Z5-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/0c/08a2fa6f7cb8b266cd92921965d69f/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/efd16529d13104243b107dd6dcea07/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/cb/2a2d3b9401efd19b6b84e75bd3ecf7/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f0/1fce71f2ef9b8f9400f117b5c8aa3e/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f1/d8aa37a40a1e2222c1f5a2df22b6c9/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/69/085f43b9a47d72379cfe69300d1dab/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d3/ff0f1c5e31103f02a883b7de99aefb/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/7b/efd16529d13104243b107dd6dcea07/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/b582d8282d4c2d405fe43ea20e830b/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/3476d8dae41070839820cd1db2e3dd/1136_4Z5-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory