File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/de/7bfe7bcbae5764aeee16c18ef15f5c/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_Kh-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_coding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_Kh-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_coding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 3.3s, est remaining 62.5s, peak mem 3296MB, user 77.3s, sys 2.2s, output queue size 146
progress 10% @chr2:84000001, elapsed 6.3s, est remaining 56.7s, peak mem 4339MB, user 167.1s, sys 4.1s, output queue size 68
progress 15% @chr3:18000001, elapsed 9.7s, est remaining 54.8s, peak mem 6026MB, user 261.5s, sys 8.6s, output queue size 203
progress 20% @chr3:178000001, elapsed 12.7s, est remaining 50.6s, peak mem 7851MB, user 349.9s, sys 10.7s, output queue size 364
progress 25% @chr4:133000001, elapsed 15.2s, est remaining 45.5s, peak mem 8718MB, user 422.4s, sys 12.4s, output queue size 525
progress 30% @chr5:106000001, elapsed 17.2s, est remaining 40.2s, peak mem 8845MB, user 484.4s, sys 13.2s, output queue size 687
progress 35% @chr6:52000001, elapsed 19.9s, est remaining 37.0s, peak mem 8893MB, user 567.9s, sys 18.2s, output queue size 625
progress 40% @chr7:48000001, elapsed 22.8s, est remaining 34.1s, peak mem 8925MB, user 639.4s, sys 18.7s, output queue size 786
progress 45% @chr8:75000001, elapsed 26.0s, est remaining 31.8s, peak mem 9115MB, user 737.3s, sys 19.6s, output queue size 948
progress 50% @chr9:62000001, elapsed 29.6s, est remaining 29.6s, peak mem 9640MB, user 847.4s, sys 20.5s, output queue size 366
progress 55% @chr10:104000001, elapsed 33.1s, est remaining 27.1s, peak mem 9824MB, user 960.9s, sys 21.7s, output queue size 527
progress 60% @chr11:134000001, elapsed 36.0s, est remaining 24.0s, peak mem 9824MB, user 1055.6s, sys 22.4s, output queue size 510
progress 65% @chr12:112000001, elapsed 39.6s, est remaining 21.3s, peak mem 9906MB, user 1152.6s, sys 23.2s, output queue size 672
progress 70% @chr14:85000001, elapsed 41.4s, est remaining 17.8s, peak mem 9921MB, user 1217.6s, sys 23.6s, output queue size 635
progress 75% @chr16:42000001, elapsed 45.3s, est remaining 15.1s, peak mem 9987MB, user 1336.2s, sys 24.6s, output queue size 461
progress 80% @chr17:61000001, elapsed 50.5s, est remaining 12.6s, peak mem 10031MB, user 1464.6s, sys 25.4s, output queue size 623
progress 85% @chr20:43000001, elapsed 55.4s, est remaining 9.8s, peak mem 10031MB, user 1624.5s, sys 26.5s, output queue size 785
progress 90% @chrX:36000001, elapsed 58.1s, est remaining 6.5s, peak mem 10264MB, user 1730.5s, sys 27.3s, output queue size 513
progress 95% @chrY:54000001, elapsed 59.9s, est remaining 3.2s, peak mem 10285MB, user 1774.5s, sys 27.7s, output queue size 675
progress 100% @chrX:67000001, elapsed 86.6s, est remaining 0.0s, peak mem 10603MB, user 1894.2s, sys 28.9s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 62489204264
reads: 1154230309
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 948.048 user 24.562 sys 971.941 real
done: 1 calls 0.008 user 0.057 sys 0.066 real
exec_no_coor: 1 calls 0.008 user 0.000 sys 0.012 real
execute: 1 calls 0.005 user 0.003 sys 86.638 real
idle: 803 calls 0.182 user 0.002 sys 790.926 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 11118534656 mem 1895.236 user 29.145 sys 87.884 real