Work Directory

Task
DAQ:BAM_POSTDEDUP_QC:SEQTOOL (659_Kh-T1-TDNA-1_A23MHWWLT4_1)
Attempt
1
S3 Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/49/86eac66a945accfc7805696bb5e87d

Files (72)

Name Size Modified
.command.begin 6 bytes Jun 05, 2026 4:05 PM
.command.err 10.7 KB Jun 05, 2026 4:27 PM
.command.log 30.7 KB Jun 05, 2026 4:27 PM
.command.out 17.5 KB Jun 05, 2026 4:27 PM
.command.run 17.3 KB Jun 05, 2026 4:05 PM
.command.sh 1.6 KB Jun 05, 2026 4:05 PM
.command.trace 288 bytes Jun 05, 2026 4:27 PM
.command.yaml 3.5 KB Jun 05, 2026 4:05 PM
.exitcode 1 byte Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md.depth.gz 166.8 MB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md.depth.gz.tbi 583.3 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md.depth.png 29.2 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md.depth_hist.tsv 11.3 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md.noise_summary.tsv 221 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/contamination.tsv 170 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 437 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_coding_postQC_hg38.bed.tsv 449 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 449 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.altera_v3_targets_postQC_hg38.bed.tsv 448 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.foresight_clarity_targets_hg38.bed.tsv 445 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 449 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 448 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/depth_stats.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 448 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/fragsize.fragsize.png 29.8 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/fragsize.fragsize.table 305 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/full_bed.bed 4.6 MB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.FINAL_hotspot_list_07302025_hg38_sorted.bed.png 43.6 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_coding_postQC_hg38.bed.png 50.1 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_noncoding_postQC_hg38.bed.png 51.9 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.altera_v3_targets_postQC_hg38.bed.png 49.7 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.foresight_clarity_targets_hg38.bed.png 44.7 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.png 53.3 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.png 52.5 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.png 49.8 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 463 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 538 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 548 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.altera_v3_targets_postQC_hg38.bed.tsv 543 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.foresight_clarity_targets_hg38.bed.tsv 513 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 543 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 543 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/gc_bias_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 533 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/qc_complete.txt 28 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 618 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_coding_postQC_hg38.bed.tsv 622 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 623 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.altera_v3_targets_postQC_hg38.bed.tsv 623 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.foresight_clarity_targets_hg38.bed.tsv 622 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 623 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 624 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/read_qc.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 623 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 2.1 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_coding_postQC_hg38.bed.tsv 266.2 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 294.7 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.altera_v3_targets_postQC_hg38.bed.tsv 377.1 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.foresight_clarity_targets_hg38.bed.tsv 57.8 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 5.4 MB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 5.2 MB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/reads_per_target.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 7.1 MB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/saturation_plot.png 45.4 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/saturation_qc.tsv 76 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.FINAL_hotspot_list_07302025_hg38_sorted.bed.tsv 68 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_coding_postQC_hg38.bed.tsv 70 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_noncoding_postQC_hg38.bed.tsv 73 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.altera_v3_targets_postQC_hg38.bed.tsv 63 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.foresight_clarity_targets_hg38.bed.tsv 63 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed.tsv 127 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2-targets-hg38_minus_altera_v3_targets_postQC_hg38.bed.tsv 107 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1.md/total_base_counts.xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed.tsv 155 bytes Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1_basic_stats.tsv 1.4 KB Jun 05, 2026 4:27 PM
659_Kh-T1-TDNA-1_A23MHWWLT4_1/659_Kh-T1-TDNA-1_A23MHWWLT4_1_full_basic_stats.tsv 5.9 KB Jun 05, 2026 4:27 PM
versions.yml 49 bytes Jun 05, 2026 4:27 PM