File Info

Filename
.command.log
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/34d3d20c30eb2848dff5d0e6162515/.command.log
Size
1.7 KB
Task
DAQ:SAMTOOLS_MERGE (1029_BCAN-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

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  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/34d3d20c30eb2848dff5d0e6162515/.command.sh
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/d4/5e0df4c4699ae4a8000eb592cb3401/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6a/3fa98e037918613187e8c28cd51156/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/62/bb828237bc07c64d941b52f795dee0/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/3c8f362516627acac32531b3b78e33/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/54/0720b1297c686ee33b05f023744ffe/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/20/34d3d20c30eb2848dff5d0e6162515/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/70/d4dcb1d40b544bbc908a19ce4a2214/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ee/1631b105005abcb4c916369e763697/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ba/a5141066e996c1c41c4fe98a2f6905/1029_BCAN-T1-TDNA-1_A23MHWWLT4_1.bam
==> STAGING COMPLETE (12 inputs)

ls: cannot access '*.cram': No such file or directory
ls: cannot access '*.crai': No such file or directory