File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f4/265f06a01814b4d0dc0e2641b4942f/.command.err
Size
3.7 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 659_cuO-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 659_cuO-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:172000001, elapsed 0.5s, est remaining 9.5s, peak mem 554MB, user 11.9s, sys 0.5s, output queue size 145
progress 10% @chr2:80000001, elapsed 0.9s, est remaining 8.0s, peak mem 658MB, user 24.6s, sys 0.7s, output queue size 48
progress 15% @chr2:172000001, elapsed 1.4s, est remaining 7.7s, peak mem 964MB, user 37.3s, sys 0.9s, output queue size 203
progress 20% @chr3:176000001, elapsed 1.7s, est remaining 7.0s, peak mem 979MB, user 49.9s, sys 1.2s, output queue size 141
progress 25% @chr4:124000001, elapsed 2.1s, est remaining 6.3s, peak mem 983MB, user 61.3s, sys 1.4s, output queue size 302
progress 30% @chr4:105000001, elapsed 2.4s, est remaining 5.6s, peak mem 1003MB, user 70.3s, sys 1.5s, output queue size 464
progress 35% @chr6:63000001, elapsed 2.8s, est remaining 5.2s, peak mem 1023MB, user 80.8s, sys 1.7s, output queue size 625
progress 40% @chr7:65000001, elapsed 3.2s, est remaining 4.8s, peak mem 1045MB, user 93.1s, sys 2.0s, output queue size 194
progress 45% @chr8:78000001, elapsed 3.7s, est remaining 4.5s, peak mem 1069MB, user 107.0s, sys 2.2s, output queue size 204
progress 50% @chr9:91000001, elapsed 4.0s, est remaining 4.0s, peak mem 1108MB, user 118.6s, sys 2.4s, output queue size 366
progress 55% @chr10:101000001, elapsed 4.5s, est remaining 3.7s, peak mem 1127MB, user 132.3s, sys 2.5s, output queue size 348
progress 60% @chr11:130000001, elapsed 5.0s, est remaining 3.3s, peak mem 1139MB, user 145.8s, sys 2.7s, output queue size 510
progress 65% @chr9:84000001, elapsed 5.4s, est remaining 2.9s, peak mem 1152MB, user 159.7s, sys 2.8s, output queue size 672
progress 70% @chr14:50000001, elapsed 5.7s, est remaining 2.4s, peak mem 1153MB, user 167.7s, sys 2.9s, output queue size 833
progress 75% @chr16:42000001, elapsed 6.2s, est remaining 2.1s, peak mem 1165MB, user 182.2s, sys 3.2s, output queue size 461
progress 80% @chr18:9000001, elapsed 6.8s, est remaining 1.7s, peak mem 1165MB, user 199.1s, sys 3.4s, output queue size 623
progress 85% @chr19:45000001, elapsed 7.3s, est remaining 1.3s, peak mem 1165MB, user 219.6s, sys 3.7s, output queue size 351
progress 90% @chrX:1000001, elapsed 7.7s, est remaining 0.9s, peak mem 1165MB, user 230.9s, sys 3.9s, output queue size 513
progress 95% @chrY:48000001, elapsed 8.0s, est remaining 0.4s, peak mem 1165MB, user 239.5s, sys 4.0s, output queue size 675
progress 100% @chrX:67000001, elapsed 8.6s, est remaining 0.0s, peak mem 1165MB, user 249.4s, sys 4.2s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 8443237896
reads: 177115205
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 135.918 user 2.869 sys 139.532 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.001 user 0.000 sys 0.003 real
execute: 1 calls 0.001 user 0.000 sys 8.611 real
idle: 62 calls 0.135 user 0.001 sys 42.991 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 1221832704 mem 250.390 user 4.322 sys 9.787 real