Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/6d4dc7fa37ba1c572d35d54a0191de/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/cc50b8b93a1a94f047d99135765358/1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/FINAL_hotspot_list_07302025_hg38_sorted.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/79/cc50b8b93a1a94f047d99135765358/1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/3d/6d4dc7fa37ba1c572d35d54a0191de/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FRC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/FINAL_hotspot_list_07302025_hg38_sorted.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FRC-T1-TDNA-1_A23MHWWLT4_1_FINAL_hotspot_list_07302025_hg38_sorted.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:177000001, elapsed 4.5s, est remaining 85.4s, peak mem 3406MB, user 102.7s, sys 3.2s, output queue size 146
progress 10% @chr2:94000001, elapsed 8.0s, est remaining 72.2s, peak mem 4402MB, user 215.8s, sys 5.9s, output queue size 117
progress 15% @chr2:224000001, elapsed 11.9s, est remaining 67.5s, peak mem 6406MB, user 331.0s, sys 8.1s, output queue size 203
progress 20% @chr3:176000001, elapsed 15.4s, est remaining 61.7s, peak mem 6406MB, user 435.9s, sys 10.2s, output queue size 283
progress 25% @chr3:187000001, elapsed 18.4s, est remaining 55.3s, peak mem 6406MB, user 535.5s, sys 11.4s, output queue size 302
progress 30% @chr5:101000001, elapsed 20.9s, est remaining 48.8s, peak mem 6406MB, user 605.7s, sys 12.1s, output queue size 464
progress 35% @chr6:79000001, elapsed 24.4s, est remaining 45.4s, peak mem 6406MB, user 702.4s, sys 13.2s, output queue size 625
progress 40% @chr7:65000001, elapsed 28.5s, est remaining 42.7s, peak mem 6719MB, user 816.1s, sys 14.6s, output queue size 786
progress 45% @chr8:75000001, elapsed 32.7s, est remaining 40.0s, peak mem 6794MB, user 956.9s, sys 15.9s, output queue size 204
progress 50% @chr8:42000001, elapsed 36.8s, est remaining 36.8s, peak mem 7494MB, user 1055.0s, sys 17.4s, output queue size 366
progress 55% @chr10:118000001, elapsed 41.1s, est remaining 33.7s, peak mem 7720MB, user 1194.2s, sys 19.0s, output queue size 527
progress 60% @chr12:1000001, elapsed 45.4s, est remaining 30.3s, peak mem 7720MB, user 1341.1s, sys 20.1s, output queue size 510
progress 65% @chr12:123000001, elapsed 49.4s, est remaining 26.6s, peak mem 7720MB, user 1464.6s, sys 21.0s, output queue size 474
progress 70% @chr14:35000001, elapsed 52.0s, est remaining 22.3s, peak mem 7720MB, user 1539.0s, sys 21.6s, output queue size 635
progress 75% @chr16:42000001, elapsed 56.4s, est remaining 18.8s, peak mem 7720MB, user 1657.4s, sys 22.4s, output queue size 797
progress 80% @chr18:25000001, elapsed 63.2s, est remaining 15.8s, peak mem 7839MB, user 1852.3s, sys 24.1s, output queue size 623
progress 85% @chr20:23000001, elapsed 68.4s, est remaining 12.1s, peak mem 7839MB, user 2031.6s, sys 25.5s, output queue size 785
progress 90% @chr22:36000001, elapsed 72.2s, est remaining 8.0s, peak mem 7865MB, user 2171.3s, sys 26.5s, output queue size 513
progress 95% @chrY:54000001, elapsed 74.7s, est remaining 3.9s, peak mem 7865MB, user 2233.9s, sys 27.2s, output queue size 675
progress 100% @chr22:23000001, elapsed 81.8s, est remaining 0.0s, peak mem 7865MB, user 2337.0s, sys 27.9s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 72638040988
reads: 1429869427
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1133.975 user 24.598 sys 1162.075 real
done: 1 calls 0.000 user 0.000 sys 0.002 real
exec_no_coor: 1 calls 0.006 user 0.007 sys 0.025 real
execute: 1 calls 0.001 user 0.010 sys 81.827 real
idle: 240 calls 0.155 user 0.001 sys 200.998 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8247889920 mem 2337.802 user 28.303 sys 83.158 real