Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/a5f6e4a71c626d36dd1f149bc13894/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/87f5f2c5f87d806b00a0a853358d4c/1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/4d/a5f6e4a71c626d36dd1f149bc13894/.command.run
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/foresight_clarity_targets_hg38.bed
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ff/87f5f2c5f87d806b00a0a853358d4c/1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/beds/altera_subpanels/hg38/foresight/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed
==> STAGING COMPLETE (8 inputs)

cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_7GC-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_7GC-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:151000001, elapsed 5.2s, est remaining 99.6s, peak mem 3815MB, user 118.7s, sys 3.7s, output queue size 150
progress 10% @chr2:80000001, elapsed 9.1s, est remaining 82.1s, peak mem 4703MB, user 250.1s, sys 7.0s, output queue size 96
progress 15% @chr2:237000001, elapsed 13.5s, est remaining 76.7s, peak mem 6448MB, user 380.7s, sys 10.7s, output queue size 122
progress 20% @chr3:155000001, elapsed 17.3s, est remaining 69.4s, peak mem 6448MB, user 499.5s, sys 12.2s, output queue size 141
progress 25% @chr4:129000001, elapsed 20.6s, est remaining 61.7s, peak mem 6448MB, user 595.5s, sys 13.1s, output queue size 302
progress 30% @chr5:107000001, elapsed 23.2s, est remaining 54.1s, peak mem 6448MB, user 673.4s, sys 13.8s, output queue size 464
progress 35% @chr6:44000001, elapsed 27.1s, est remaining 50.3s, peak mem 6448MB, user 779.6s, sys 14.8s, output queue size 625
progress 40% @chr7:64000001, elapsed 31.4s, est remaining 47.1s, peak mem 7281MB, user 906.5s, sys 15.9s, output queue size 197
progress 45% @chr8:54000001, elapsed 36.0s, est remaining 44.0s, peak mem 7395MB, user 1048.7s, sys 17.2s, output queue size 356
progress 50% @chr9:81000001, elapsed 40.0s, est remaining 40.0s, peak mem 7662MB, user 1160.0s, sys 18.1s, output queue size 366
progress 55% @chr10:104000001, elapsed 44.4s, est remaining 36.3s, peak mem 7750MB, user 1306.8s, sys 19.5s, output queue size 348
progress 60% @chr11:117000001, elapsed 48.8s, est remaining 32.5s, peak mem 7750MB, user 1444.9s, sys 20.4s, output queue size 510
progress 65% @chr10:121000001, elapsed 53.4s, est remaining 28.7s, peak mem 7811MB, user 1569.5s, sys 21.2s, output queue size 672
progress 70% @chr14:72000001, elapsed 56.2s, est remaining 24.1s, peak mem 7820MB, user 1648.5s, sys 21.8s, output queue size 833
progress 75% @chr16:42000001, elapsed 61.2s, est remaining 20.4s, peak mem 7870MB, user 1821.0s, sys 22.9s, output queue size 461
progress 80% @chr18:9000001, elapsed 68.1s, est remaining 17.0s, peak mem 8111MB, user 2011.0s, sys 24.0s, output queue size 623
progress 85% @chr20:39000001, elapsed 74.1s, est remaining 13.1s, peak mem 8111MB, user 2206.6s, sys 25.3s, output queue size 785
progress 90% @chrX:42000001, elapsed 78.2s, est remaining 8.7s, peak mem 8122MB, user 2347.6s, sys 26.2s, output queue size 513
progress 95% @chrY:54000001, elapsed 80.5s, est remaining 4.2s, peak mem 8266MB, user 2411.3s, sys 26.7s, output queue size 675
progress 100% @chr22:23000001, elapsed 87.6s, est remaining 0.0s, peak mem 8266MB, user 2510.3s, sys 27.2s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 74522276073
reads: 1535620780
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1187.425 user 23.825 sys 1210.978 real
done: 1 calls 0.000 user 0.007 sys 0.007 real
exec_no_coor: 1 calls 0.006 user 0.020 sys 0.043 real
execute: 1 calls 0.004 user 0.001 sys 87.629 real
idle: 244 calls 0.111 user 0.001 sys 207.804 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 8668192768 mem 2511.466 user 27.446 sys 88.907 real