File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/b7/6f624a8c87d0a54f31c32cf98b6833/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1029_FZX-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/altera_v3_targets_noncoding_postQC_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1029_FZX-T1-TDNA-1_A23MHWWLT4_1_altera_v3_targets_noncoding_postQC_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:11000001, elapsed 3.6s, est remaining 67.6s, peak mem 3003MB, user 79.1s, sys 2.6s, output queue size 150
progress 10% @chr2:90000001, elapsed 6.7s, est remaining 60.2s, peak mem 4370MB, user 178.0s, sys 5.2s, output queue size 117
progress 15% @chr2:74000001, elapsed 10.8s, est remaining 61.2s, peak mem 7411MB, user 292.7s, sys 7.7s, output queue size 203
progress 20% @chr3:176000001, elapsed 14.0s, est remaining 56.2s, peak mem 7997MB, user 396.4s, sys 10.2s, output queue size 283
progress 25% @chr4:134000001, elapsed 16.5s, est remaining 49.4s, peak mem 7997MB, user 467.7s, sys 11.1s, output queue size 444
progress 30% @chr5:99000001, elapsed 18.4s, est remaining 42.9s, peak mem 7997MB, user 533.4s, sys 11.9s, output queue size 464
progress 35% @chr6:70000001, elapsed 21.4s, est remaining 39.8s, peak mem 8131MB, user 614.2s, sys 12.6s, output queue size 625
progress 40% @chr7:48000001, elapsed 25.0s, est remaining 37.5s, peak mem 8410MB, user 709.2s, sys 13.5s, output queue size 786
progress 45% @chr8:66000001, elapsed 29.0s, est remaining 35.4s, peak mem 8885MB, user 845.3s, sys 14.8s, output queue size 204
progress 50% @chr9:102000001, elapsed 32.5s, est remaining 32.5s, peak mem 9055MB, user 935.9s, sys 15.6s, output queue size 366
progress 55% @chr10:103000001, elapsed 36.2s, est remaining 29.6s, peak mem 9497MB, user 1047.7s, sys 16.5s, output queue size 485
progress 60% @chr12:3000001, elapsed 39.6s, est remaining 26.4s, peak mem 9497MB, user 1155.3s, sys 17.6s, output queue size 510
progress 65% @chr10:121000001, elapsed 43.9s, est remaining 23.6s, peak mem 9654MB, user 1280.7s, sys 18.5s, output queue size 672
progress 70% @chr14:69000001, elapsed 46.3s, est remaining 19.8s, peak mem 9759MB, user 1347.6s, sys 19.0s, output queue size 833
progress 75% @chr16:42000001, elapsed 50.3s, est remaining 16.8s, peak mem 9759MB, user 1454.0s, sys 19.8s, output queue size 995
progress 80% @chr18:13000001, elapsed 56.4s, est remaining 14.1s, peak mem 9845MB, user 1655.4s, sys 21.0s, output queue size 623
progress 85% @chr19:57000001, elapsed 62.2s, est remaining 11.0s, peak mem 9845MB, user 1834.8s, sys 21.9s, output queue size 785
progress 90% @chrX:20000001, elapsed 66.2s, est remaining 7.4s, peak mem 9907MB, user 1951.3s, sys 22.7s, output queue size 947
progress 95% @chrY:54000001, elapsed 68.4s, est remaining 3.6s, peak mem 10040MB, user 2009.0s, sys 23.2s, output queue size 1109
progress 100% @chr22:23000001, elapsed 78.8s, est remaining 0.0s, peak mem 10040MB, user 2153.1s, sys 24.1s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 67770633046
reads: 1275212856
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1047.970 user 20.917 sys 1068.060 real
done: 1 calls 0.016 user 0.009 sys 0.033 real
exec_no_coor: 1 calls 0.000 user 0.006 sys 0.009 real
execute: 1 calls 0.003 user 0.001 sys 78.832 real
idle: 317 calls 0.187 user 0.001 sys 295.610 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 10528546816 mem 2154.168 user 24.337 sys 80.168 real