cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_81F-T1-TDNA-1_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz 1136_81F-T1-TDNA-1_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119893964, elapsed 8.3s, est remaining 157.5s, peak mem 5018MB, user 221.3s, sys 5.9s, output queue size 171
progress 10% @chr2:21001730, elapsed 14.7s, est remaining 132.3s, peak mem 5723MB, user 392.2s, sys 7.7s, output queue size 648
progress 15% @chr2:190057258, elapsed 20.8s, est remaining 117.9s, peak mem 6095MB, user 555.3s, sys 9.2s, output queue size 287
progress 20% @chr3:98532034, elapsed 28.4s, est remaining 113.7s, peak mem 6095MB, user 764.6s, sys 10.7s, output queue size 420
progress 25% @chr4:88676334, elapsed 34.9s, est remaining 104.7s, peak mem 6323MB, user 936.9s, sys 12.0s, output queue size 736
progress 30% @chr5:147882027, elapsed 39.3s, est remaining 91.7s, peak mem 6323MB, user 1054.3s, sys 13.0s, output queue size 196
progress 35% @chr6:131808036, elapsed 47.5s, est remaining 88.2s, peak mem 6646MB, user 1277.2s, sys 14.4s, output queue size 626
progress 40% @chr7:128350856, elapsed 54.4s, est remaining 81.7s, peak mem 6737MB, user 1461.9s, sys 15.6s, output queue size 63
progress 45% @chr9:1991243, elapsed 62.0s, est remaining 75.8s, peak mem 7067MB, user 1669.3s, sys 17.0s, output queue size 149
progress 50% @chr10:33213386, elapsed 69.6s, est remaining 69.6s, peak mem 7283MB, user 1875.6s, sys 18.4s, output queue size 99
progress 55% @chr11:47848219, elapsed 76.1s, est remaining 62.3s, peak mem 7283MB, user 2052.3s, sys 19.4s, output queue size 24
progress 60% @chr12:23575661, elapsed 85.7s, est remaining 57.2s, peak mem 8987MB, user 2321.1s, sys 22.0s, output queue size 702
progress 65% @chr13:49267490, elapsed 92.9s, est remaining 50.0s, peak mem 8987MB, user 2517.8s, sys 23.4s, output queue size 62
progress 70% @chr15:43027776, elapsed 99.3s, est remaining 42.6s, peak mem 8987MB, user 2690.3s, sys 24.4s, output queue size 65
progress 75% @chr16:30964094, elapsed 107.1s, est remaining 35.7s, peak mem 8987MB, user 2905.8s, sys 25.8s, output queue size 25
progress 80% @chr17:42199177, elapsed 116.0s, est remaining 29.0s, peak mem 8987MB, user 3152.5s, sys 27.4s, output queue size 683
progress 85% @chr19:5691319, elapsed 124.4s, est remaining 22.0s, peak mem 8987MB, user 3386.2s, sys 28.7s, output queue size 406
progress 90% @chr19:55924590, elapsed 133.5s, est remaining 14.8s, peak mem 8987MB, user 3639.8s, sys 30.3s, output queue size 88
progress 95% @chr22:36490008, elapsed 140.8s, est remaining 7.4s, peak mem 8987MB, user 3840.3s, sys 31.5s, output queue size 24
progress 100% @chr6_GL000251v2_alt:3939000, elapsed 147.5s, est remaining 0.0s, peak mem 8987MB, user 4019.6s, sys 32.7s, output queue size 7
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 63239640700
reads: 1187143287
contig: 201779 intervals 37922265 bases
advance: 208647 calls 2048.186 user 24.771 sys 2168.992 real
done: 1 calls 0.331 user 0.361 sys 0.699 real
execute: 1 calls 0.009 user 0.001 sys 147.463 real
fetch_reads: 208647 calls 187.067 user 0.329 sys 195.642 real
fetch_ref: 206501 calls 0.991 user 1.006 sys 2.121 real
fetch_vcf: 206501 calls 81.856 user 2.042 sys 86.469 real
idle: 125 calls 0.198 user 0.001 sys 32.617 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 433439 calls 1933.236 user 3.126 sys 2000.986 real
overall: 9423921152 mem 4448.922 user 34.084 sys 149.002 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory