File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/68/bbeede9f6fd730bc268eadce884997/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_6TL-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_6TL-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:175000001, elapsed 3.3s, est remaining 62.9s, peak mem 2285MB, user 79.5s, sys 2.0s, output queue size 47
progress 10% @chr2:70000001, elapsed 6.4s, est remaining 57.3s, peak mem 3143MB, user 174.6s, sys 3.6s, output queue size 96
progress 15% @chr2:201000001, elapsed 9.3s, est remaining 52.5s, peak mem 4092MB, user 262.3s, sys 5.0s, output queue size 122
progress 20% @chr3:176000001, elapsed 11.7s, est remaining 46.7s, peak mem 4131MB, user 333.3s, sys 5.7s, output queue size 218
progress 25% @chr4:133000001, elapsed 14.0s, est remaining 42.1s, peak mem 4258MB, user 409.5s, sys 6.4s, output queue size 302
progress 30% @chr5:100000001, elapsed 16.1s, est remaining 37.5s, peak mem 4366MB, user 468.1s, sys 6.9s, output queue size 464
progress 35% @chr6:63000001, elapsed 18.9s, est remaining 35.1s, peak mem 4506MB, user 549.9s, sys 7.6s, output queue size 625
progress 40% @chr7:6000001, elapsed 22.0s, est remaining 33.1s, peak mem 4961MB, user 637.2s, sys 8.4s, output queue size 786
progress 45% @chr8:82000001, elapsed 26.1s, est remaining 31.9s, peak mem 5431MB, user 758.5s, sys 9.5s, output queue size 204
progress 50% @chr8:38000001, elapsed 31.6s, est remaining 31.6s, peak mem 7161MB, user 909.8s, sys 10.8s, output queue size 366
progress 55% @chr10:32000001, elapsed 35.1s, est remaining 28.7s, peak mem 7161MB, user 1026.7s, sys 11.9s, output queue size 348
progress 60% @chr12:5000001, elapsed 37.9s, est remaining 25.2s, peak mem 7161MB, user 1128.2s, sys 12.6s, output queue size 510
progress 65% @chr12:106000001, elapsed 41.3s, est remaining 22.2s, peak mem 7161MB, user 1232.2s, sys 13.3s, output queue size 474
progress 70% @chr14:60000001, elapsed 43.3s, est remaining 18.6s, peak mem 7161MB, user 1294.7s, sys 13.7s, output queue size 635
progress 75% @chr16:42000001, elapsed 46.9s, est remaining 15.6s, peak mem 7161MB, user 1399.0s, sys 14.3s, output queue size 461
progress 80% @chr18:24000001, elapsed 51.8s, est remaining 13.0s, peak mem 7161MB, user 1524.2s, sys 15.0s, output queue size 623
progress 85% @chr20:20000001, elapsed 55.5s, est remaining 9.8s, peak mem 7161MB, user 1636.9s, sys 15.7s, output queue size 785
progress 90% @chrX:34000001, elapsed 58.4s, est remaining 6.5s, peak mem 7161MB, user 1754.3s, sys 16.3s, output queue size 513
progress 95% @chrY:51000001, elapsed 60.6s, est remaining 3.2s, peak mem 7161MB, user 1833.9s, sys 16.7s, output queue size 240
progress 100% @chrX:67000001, elapsed 67.1s, est remaining 0.0s, peak mem 7161MB, user 1893.5s, sys 17.2s, output queue size 3540
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 44707427019
reads: 902411031
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 724.616 user 14.672 sys 737.767 real
done: 1 calls 0.354 user 0.077 sys 0.436 real
exec_no_coor: 1 calls 0.009 user 0.000 sys 0.017 real
execute: 1 calls 0.006 user 0.003 sys 67.100 real
idle: 247 calls 0.182 user 0.001 sys 211.018 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 7509323776 mem 1895.712 user 17.726 sys 69.232 real