File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/fb/8dacfbf9fc334a3d5ec8489e8638a7/.command.err
Size
3.9 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3WJ-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:169000001, elapsed 3.2s, est remaining 61.2s, peak mem 2179MB, user 72.5s, sys 2.1s, output queue size 146
progress 10% @chr2:58000001, elapsed 5.6s, est remaining 50.5s, peak mem 2746MB, user 151.9s, sys 3.2s, output queue size 166
progress 15% @chr2:197000001, elapsed 8.1s, est remaining 45.8s, peak mem 3363MB, user 233.0s, sys 4.6s, output queue size 122
progress 20% @chr3:174000001, elapsed 10.5s, est remaining 41.9s, peak mem 3451MB, user 304.3s, sys 5.3s, output queue size 141
progress 25% @chr4:103000001, elapsed 12.5s, est remaining 37.5s, peak mem 3518MB, user 367.5s, sys 5.8s, output queue size 302
progress 30% @chr5:104000001, elapsed 14.1s, est remaining 32.9s, peak mem 3545MB, user 416.9s, sys 6.4s, output queue size 464
progress 35% @chr6:56000001, elapsed 16.5s, est remaining 30.6s, peak mem 3730MB, user 476.6s, sys 7.0s, output queue size 625
progress 40% @chr7:45000001, elapsed 19.0s, est remaining 28.5s, peak mem 3841MB, user 559.4s, sys 7.7s, output queue size 195
progress 45% @chr8:58000001, elapsed 21.7s, est remaining 26.5s, peak mem 3841MB, user 639.6s, sys 8.2s, output queue size 204
progress 50% @chr9:88000001, elapsed 23.8s, est remaining 23.8s, peak mem 3949MB, user 698.3s, sys 8.7s, output queue size 366
progress 55% @chr10:86000001, elapsed 26.8s, est remaining 21.9s, peak mem 4103MB, user 787.3s, sys 9.5s, output queue size 348
progress 60% @chr12:1000001, elapsed 29.7s, est remaining 19.8s, peak mem 4129MB, user 879.7s, sys 10.2s, output queue size 510
progress 65% @chr13:23000001, elapsed 32.4s, est remaining 17.5s, peak mem 4229MB, user 973.3s, sys 10.8s, output queue size 138
progress 70% @chr14:72000001, elapsed 34.1s, est remaining 14.6s, peak mem 4229MB, user 1025.2s, sys 11.1s, output queue size 299
progress 75% @chr16:42000001, elapsed 37.2s, est remaining 12.4s, peak mem 4229MB, user 1109.7s, sys 11.6s, output queue size 461
progress 80% @chr18:28000001, elapsed 41.9s, est remaining 10.5s, peak mem 4334MB, user 1232.0s, sys 12.4s, output queue size 623
progress 85% @chr19:57000001, elapsed 46.0s, est remaining 8.1s, peak mem 4381MB, user 1380.1s, sys 13.2s, output queue size 351
progress 90% @chr22:42000001, elapsed 48.6s, est remaining 5.4s, peak mem 4458MB, user 1461.8s, sys 13.7s, output queue size 513
progress 95% @chrY:53000001, elapsed 50.0s, est remaining 2.6s, peak mem 4458MB, user 1517.5s, sys 14.1s, output queue size 240
progress 100% @chr22:23000001, elapsed 55.0s, est remaining 0.0s, peak mem 4458MB, user 1562.2s, sys 14.4s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 40063100595
reads: 753549713
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 632.489 user 12.416 sys 646.749 real
done: 1 calls 0.346 user 0.020 sys 0.370 real
exec_no_coor: 1 calls 0.005 user 0.005 sys 0.015 real
execute: 1 calls 0.005 user 0.003 sys 55.028 real
idle: 192 calls 0.175 user 0.001 sys 161.162 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 4675334144 mem 1564.275 user 14.869 sys 56.751 real