File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/eb/6f8ff1588556b46ea76c3e2ed31f1d/.command.err
Size
4.0 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3U6-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3U6-T1-TDNA-1_A23MHWWLT4_1_xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity_footprint.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:173000001, elapsed 7.8s, est remaining 147.7s, peak mem 5479MB, user 168.9s, sys 4.2s, output queue size 150
progress 10% @chr2:46000001, elapsed 13.7s, est remaining 123.2s, peak mem 6950MB, user 363.3s, sys 7.9s, output queue size 166
progress 15% @chr2:224000001, elapsed 20.0s, est remaining 113.5s, peak mem 11120MB, user 559.6s, sys 12.0s, output queue size 203
progress 20% @chr3:178000001, elapsed 25.7s, est remaining 102.7s, peak mem 11826MB, user 731.2s, sys 15.6s, output queue size 283
progress 25% @chr4:124000001, elapsed 30.4s, est remaining 91.1s, peak mem 11826MB, user 884.8s, sys 16.7s, output queue size 302
progress 30% @chr5:107000001, elapsed 33.9s, est remaining 79.2s, peak mem 11826MB, user 980.7s, sys 17.3s, output queue size 464
progress 35% @chr6:86000001, elapsed 39.5s, est remaining 73.3s, peak mem 11946MB, user 1135.8s, sys 18.4s, output queue size 625
progress 40% @chr7:48000001, elapsed 46.1s, est remaining 69.1s, peak mem 12741MB, user 1301.3s, sys 19.4s, output queue size 786
progress 45% @chr8:78000001, elapsed 53.0s, est remaining 64.8s, peak mem 13027MB, user 1556.8s, sys 20.9s, output queue size 204
progress 50% @chr9:102000001, elapsed 58.5s, est remaining 58.5s, peak mem 13386MB, user 1694.7s, sys 21.8s, output queue size 366
progress 55% @chr10:99000001, elapsed 65.7s, est remaining 53.7s, peak mem 13707MB, user 1933.0s, sys 23.4s, output queue size 348
progress 60% @chr11:134000001, elapsed 73.1s, est remaining 48.7s, peak mem 13727MB, user 2163.7s, sys 24.7s, output queue size 510
progress 65% @chr13:39000001, elapsed 80.4s, est remaining 43.3s, peak mem 13788MB, user 2349.8s, sys 26.2s, output queue size 672
progress 70% @chr13:28000001, elapsed 84.6s, est remaining 36.3s, peak mem 13788MB, user 2510.7s, sys 27.1s, output queue size 833
progress 75% @chr16:42000001, elapsed 92.6s, est remaining 30.9s, peak mem 14132MB, user 2751.2s, sys 28.4s, output queue size 461
progress 80% @chr17:50000001, elapsed 105.1s, est remaining 26.3s, peak mem 14322MB, user 3072.9s, sys 30.6s, output queue size 623
progress 85% @chr20:9000001, elapsed 116.7s, est remaining 20.6s, peak mem 14395MB, user 3495.8s, sys 32.7s, output queue size 351
progress 90% @chrX:30000001, elapsed 123.6s, est remaining 13.7s, peak mem 14458MB, user 3708.6s, sys 33.8s, output queue size 513
progress 95% @chrY:53000001, elapsed 128.5s, est remaining 6.8s, peak mem 14514MB, user 3831.8s, sys 34.6s, output queue size 675
progress 100% @chr22:23000001, elapsed 143.0s, est remaining 0.0s, peak mem 14565MB, user 4045.6s, sys 35.8s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 99271553910
reads: 1941527573
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1566.172 user 32.148 sys 1598.709 real
done: 1 calls 0.349 user 0.031 sys 0.381 real
exec_no_coor: 1 calls 0.020 user 0.010 sys 0.051 real
execute: 1 calls 0.005 user 0.003 sys 143.044 real
idle: 415 calls 0.168 user 0.001 sys 393.854 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 15273369600 mem 4047.817 user 36.466 sys 145.203 real