.command.sh - Workdir - DAQ:SAMTOOLS_IDXSTATS_COUNT (1136_4GR-T1-TDNA-1_A23MHWWLT4_1)

File Info

Filename: .command.sh
Full Path: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6d/c05a5e89076bcaabbcfbb38b0f77ca/.command.sh
Size: 312 bytes
Task: DAQ:SAMTOOLS_IDXSTATS_COUNT (1136_4GR-T1-TDNA-1_A23MHWWLT4_1)
Attempt

Content

#!/bin/bash -Ceuo pipefail
bai_mapped_count.py 1136_4GR-T1-TDNA-1_A23MHWWLT4_1.recalibrated.bam.bai > 1136_4GR-T1-TDNA-1_A23MHWWLT4_1.mapped_count.txt

cat <<-END_VERSIONS > versions.yml
"DAQ:SAMTOOLS_IDXSTATS_COUNT":
    python: $(python3 --version | sed 's/Python //')
    bai_mapped_count: 1.0.0
END_VERSIONS