#!/bin/bash -Ceuo pipefail
ngscheckmate_fastq \
    -1 1047_JG-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz \
    -2 1047_JG-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz \
    SNP_GRCh38_hg38_wChr.pt \
    -p 4 \
    -s 0.05 \
    > 1047_JG-T1-TDNA-1_A23MHWWLT4_1.vaf

cat <<-END_VERSIONS > versions.yml
"DAQ:FASTQ_NGSCHECKMATE:NGSCHECKMATE_FASTQ":
    ngscheckmate: 1.0
END_VERSIONS