File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/94/c3bd25036e5785ffe6129321fd241c/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 61249878
total bases: 9248731578
Q20 bases: 9023710887(97.567%)
Q30 bases: 8640872809(93.4277%)
Q40 bases: 8640872809(93.4277%)

Read2 before filtering:
total reads: 61249878
total bases: 9248731578
Q20 bases: 8984471692(97.1427%)
Q30 bases: 8536180223(92.2957%)
Q40 bases: 8536180223(92.2957%)

Read1 after filtering:
total reads: 60769970
total bases: 8356685303
Q20 bases: 8219217766(98.355%)
Q30 bases: 7912526885(94.685%)
Q40 bases: 7912526885(94.685%)

Read2 after filtering:
total reads: 60769970
total bases: 8357942911
Q20 bases: 8188100692(97.9679%)
Q30 bases: 7841746538(93.8239%)
Q40 bases: 7841746538(93.8239%)

Filtering result:
reads passed filter: 121539940
reads failed due to low quality: 947624
reads failed due to too many N: 10048
reads failed due to too short: 2144
reads with adapter trimmed: 44651491
bases trimmed due to adapters: 1642955921

Duplication rate: 10.0721%

Insert size peak (evaluated by paired-end reads): 130

JSON report: 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L006_R1_001.fastq.gz --in2 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_S22_L006_R2_001.fastq.gz --out1 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1/1029_BICJ-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_BICJ-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 277 seconds