File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/5e/942165de9d931083240c8f6aa953a2/.command.err
Size
1.8 KB
Attempt
Detecting adapter sequence for read1...
>Illumina TruSeq Adapter Read 1
AGATCGGAAGAGCACACGTCTGAACTCCAGTCA

Detecting adapter sequence for read2...
>Illumina TruSeq Adapter Read 2
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGT

Read1 before filtering:
total reads: 95034184
total bases: 14350161784
Q20 bases: 13926048216(97.0445%)
Q30 bases: 13141475546(91.5772%)
Q40 bases: 13141475546(91.5772%)

Read2 before filtering:
total reads: 95034184
total bases: 14350161784
Q20 bases: 13637700622(95.0352%)
Q30 bases: 12444361351(86.7193%)
Q40 bases: 12444361351(86.7193%)

Read1 after filtering:
total reads: 93311302
total bases: 13556417732
Q20 bases: 13229865736(97.5912%)
Q30 bases: 12535536555(92.4694%)
Q40 bases: 12535536555(92.4694%)

Read2 after filtering:
total reads: 93311302
total bases: 13557632952
Q20 bases: 13006562036(95.9353%)
Q30 bases: 11955420372(88.1822%)
Q40 bases: 11955420372(88.1822%)

Filtering result:
reads passed filter: 186622604
reads failed due to low quality: 3429770
reads failed due to too many N: 11798
reads failed due to too short: 4196
reads with adapter trimmed: 29080062
bases trimmed due to adapters: 1070102237

Duplication rate: 11.4275%

Insert size peak (evaluated by paired-end reads): 192

JSON report: 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.json
HTML report: 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.html

fastp --in1 1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L006_R1_001.fastq.gz --in2 1029_T05-T1-TDNA-1_A23MHWWLT4_1_S19_L006_R2_001.fastq.gz --out1 1029_T05-T1-TDNA-1_A23MHWWLT4_1/1029_T05-T1-TDNA-1_A23MHWWLT4_1_R1.fastq.gz --out2 1029_T05-T1-TDNA-1_A23MHWWLT4_1/1029_T05-T1-TDNA-1_A23MHWWLT4_1_R2.fastq.gz --detect_adapter_for_pe --length_required 15 --json 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.json --html 1029_T05-T1-TDNA-1_A23MHWWLT4_1.fastp.html --thread 4 
fastp v1.0.1, time used: 1174 seconds