Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/3fb04cb5d73ef9c703508b70701e98/.command.sh
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Sequence/WholeGenomeFasta/Homo_sapiens_assembly38.fasta.fai
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3b8f493c4bbd324b6d78581c167e95/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.recalibrated.bam
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz
  Downloading: s3://natera-platform-sandbox/pipeline-resources/ngi-igenomes/igenomes/Homo_sapiens/GATK/GRCh38/Annotation/intervals/altera_padded_intervals/scatter/chr16_25246607-25247490.bed.gz.tbi
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/ce/3fb04cb5d73ef9c703508b70701e98/.command.run
  Downloading: s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/6f/3b8f493c4bbd324b6d78581c167e95/FFPE_HD789_01_p2_gDNA_01_A23MHWWLT4_1.recalibrated.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878.bam.bai
  Downloading: s3://natera-platform-sandbox/pipeline-resources/AIH/dna_daq/stored-normals/reference-NA12878.bam
==> STAGING COMPLETE (10 inputs)


Successfully created workflow run script.
To execute the workflow, run the following script and set appropriate options:

/var/tmp/strelka/runWorkflow.py
[2026-06-06T01:01:44.275060Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Initiating pyFlow run
[2026-06-06T01:01:44.276221Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] pyFlowClientWorkflowClass: StrelkaSomaticWorkflow
[2026-06-06T01:01:44.276234Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] pyFlowVersion: 1.1.20
[2026-06-06T01:01:44.276239Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] pythonVersion: 2.7.15.final.0
[2026-06-06T01:01:44.276243Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] WorkingDir: '/tmp/nxf.XXXXYH2TDf'
[2026-06-06T01:01:44.276247Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] ProcessCmdLine: '/var/tmp/strelka/runWorkflow.py -m local -j 8'
[2026-06-06T01:01:44.276252Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] mode: local
[2026-06-06T01:01:44.276255Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] nCores: 8
[2026-06-06T01:01:44.276259Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] memMb: 1523736
[2026-06-06T01:01:44.276262Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] dataDir: /var/tmp/strelka/workspace/pyflow.data
[2026-06-06T01:01:44.276266Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] isDryRun: False
[2026-06-06T01:01:44.276269Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] isContinue: False
[2026-06-06T01:01:44.276273Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] isForceContinue: True
[2026-06-06T01:01:44.276277Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] [RunParameters] mailTo: ''
[2026-06-06T01:01:44.276740Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:masterWorkflow] Starting task specification for master workflow
[2026-06-06T01:01:44.276857Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [StrelkaSomaticWorkflow] Initiating Strelka somatic workflow version: 2.9.10
[2026-06-06T01:01:44.282450Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding sub-workflow task 'CallGenome' to master workflow
[2026-06-06T01:01:44.283218Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching sub-workflow task: 'CallGenome' from master workflow
[2026-06-06T01:01:44.283400Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:masterWorkflow] Finished task specification for master workflow
[2026-06-06T01:01:44.283693Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome] Starting task specification for sub-workflow
[2026-06-06T01:01:44.283983Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+makeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.285105Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.285321Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.285534Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.285634Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+makeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.285891Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.285971Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.286307Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.286507Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.287024Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.287290Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.287527Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.289115Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.289539Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.289764Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+makeTmpDir] Task initiated on local node
[2026-06-06T01:01:44.289905Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290140Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290209Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290321Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290385Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290563Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290628Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290738Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290803Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290914Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.290977Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.291128Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.291257Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.291576Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.291905Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292283Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292358Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292488Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292555Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292666Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292731Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292841Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.292906Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.293016Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.293078Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.293221Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.293432Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.293876Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.293945Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294053Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294117Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294232Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294350Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294479Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294541Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294646Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294711Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.294858Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.295050Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.295546Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.295950Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.309773Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310201Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310272Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+completedAllGenomeSegments' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310416Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310489Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+SNV_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310570Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_concat_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310637Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+Indel_index_vcf' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310745Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+mergeRunStats' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310811Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Adding command task 'CallGenome+removeTmpDir' to sub-workflow 'CallGenome'
[2026-06-06T01:01:44.310856Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome] Finished task specification for sub-workflow
[2026-06-06T01:01:44.314879Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+makeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.315379Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.316077Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.317616Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.318192Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0002] Task initiated on local node
[2026-06-06T01:01:44.318504Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.319155Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.319701Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.322824Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.323938Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.324347Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0004] Task initiated on local node
[2026-06-06T01:01:44.329637Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0006] Task initiated on local node
[2026-06-06T01:01:44.330735Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0003] Task initiated on local node
[2026-06-06T01:01:44.334139Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0002] Task initiated on local node
[2026-06-06T01:01:44.335883Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0006] Task initiated on local node
[2026-06-06T01:01:44.337450Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0001] Task initiated on local node
[2026-06-06T01:01:44.338080Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0003] Task initiated on local node
[2026-06-06T01:01:44.389096Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.389727Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.392502Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0002] Task initiated on local node
[2026-06-06T01:01:44.397397Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.397978Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.400911Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0004] Task initiated on local node
[2026-06-06T01:01:44.430142Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.430737Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.433806Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0001] Task initiated on local node
[2026-06-06T01:01:44.462985Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.463053Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.463602Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.464044Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:01:44.466877Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0006] Task initiated on local node
[2026-06-06T01:01:44.467747Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0004] Task initiated on local node
[2026-06-06T01:01:55.482080Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:55.483191Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:55.485962Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0000] Task initiated on local node
[2026-06-06T01:01:55.547217Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:55.547828Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:01:55.550200Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+fixVcfHeader_chromId_015_chr16_0000] Task initiated on local node
[2026-06-06T01:01:55.611920Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+fixVcfHeader_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:01:55.612500Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:01:55.614921Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0001] Task initiated on local node
[2026-06-06T01:02:08.083265Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:08.084390Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:02:08.087168Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0004] Task initiated on local node
[2026-06-06T01:02:10.153469Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:10.154141Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:10.156944Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0001] Task initiated on local node
[2026-06-06T01:02:10.218086Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:10.218627Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:02:10.221011Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0001] Task initiated on local node
[2026-06-06T01:02:25.194868Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:25.195939Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:02:25.198858Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0000] Task initiated on local node
[2026-06-06T01:02:57.168335Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.169526Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.172231Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0002] Task initiated on local node
[2026-06-06T01:02:57.233518Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.234060Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.236670Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0003] Task initiated on local node
[2026-06-06T01:02:57.265889Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.266409Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:02:57.268716Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0002] Task initiated on local node
[2026-06-06T01:03:25.089217Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.090397Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:03:25.093334Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0002] Task initiated on local node
[2026-06-06T01:03:29.566285Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.566921Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:03:29.569883Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0005] Task initiated on local node
[2026-06-06T01:03:44.683017Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:44.684010Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:03:44.686939Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0003] Task initiated on local node
[2026-06-06T01:03:44.747975Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:44.748509Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:03:44.750818Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0005] Task initiated on local node
[2026-06-06T01:03:59.914523Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:59.915643Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:03:59.918208Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0002] Task initiated on local node
[2026-06-06T01:03:59.979588Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:03:59.980100Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:03:59.982749Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0000] Task initiated on local node
[2026-06-06T01:04:00.044170Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.044694Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:04:00.047146Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_015_chr16_0007] Task initiated on local node
[2026-06-06T01:04:59.574913Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.575938Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.578547Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0002] Task initiated on local node
[2026-06-06T01:04:59.639876Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0002' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.640371Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.642959Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0004] Task initiated on local node
[2026-06-06T01:04:59.704385Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.704931Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.707447Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0006] Task initiated on local node
[2026-06-06T01:04:59.736847Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.737310Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.739720Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0001] Task initiated on local node
[2026-06-06T01:04:59.801406Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.801881Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.804293Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0003] Task initiated on local node
[2026-06-06T01:04:59.865993Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.866455Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.868606Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0003] Task initiated on local node
[2026-06-06T01:04:59.898270Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.898729Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:04:59.901267Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_017_chr18_0000] Task initiated on local node
[2026-06-06T01:05:03.972776Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:03.973298Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:05:03.976050Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0004] Task initiated on local node
[2026-06-06T01:05:04.005450Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:04.005927Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:04.008327Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0005] Task initiated on local node
[2026-06-06T01:05:04.069804Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:04.070249Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:05:04.072443Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0004] Task initiated on local node
[2026-06-06T01:05:04.102084Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:04.102519Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:04.105342Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0000] Task initiated on local node
[2026-06-06T01:05:20.421174Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:20.422214Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:05:20.425103Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_017_chr18_0000] Task initiated on local node
[2026-06-06T01:05:20.486404Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_017_chr18_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:20.486850Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:05:20.489272Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0003] Task initiated on local node
[2026-06-06T01:05:20.518783Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:20.519211Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:20.521606Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_016_chr17_0005] Task initiated on local node
[2026-06-06T01:05:25.984662Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.985156Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:05:25.988123Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+callGenomeSegment_chromId_018_chr19_0001] Task initiated on local node
[2026-06-06T01:05:52.906421Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:52.907265Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' from sub-workflow 'CallGenome'
[2026-06-06T01:05:52.910021Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0004] Task initiated on local node
[2026-06-06T01:05:52.971420Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0004' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:52.971838Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:05:52.974256Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0005] Task initiated on local node
[2026-06-06T01:05:53.036015Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:53.036437Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:05:53.038787Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0006] Task initiated on local node
[2026-06-06T01:05:53.100311Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:54.166509Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:05:54.166905Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' from sub-workflow 'CallGenome'
[2026-06-06T01:05:54.169663Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_015_chr16_0007] Task initiated on local node
[2026-06-06T01:05:54.231309Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_015_chr16_0007' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:18.807205Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:18.808246Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' from sub-workflow 'CallGenome'
[2026-06-06T01:06:18.810763Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0006] Task initiated on local node
[2026-06-06T01:06:18.872166Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0006' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:55.242829Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:06:55.243879Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' from sub-workflow 'CallGenome'
[2026-06-06T01:06:55.246556Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0001] Task initiated on local node
[2026-06-06T01:06:55.307839Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0001' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:10.724186Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:07:10.725207Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' from sub-workflow 'CallGenome'
[2026-06-06T01:07:10.728163Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0005] Task initiated on local node
[2026-06-06T01:07:10.789343Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0005' launched from sub-workflow 'CallGenome'
[2026-06-06T01:08:38.369733Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:08:38.370720Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:08:38.373797Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0000] Task initiated on local node
[2026-06-06T01:08:38.434843Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:09.559079Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:10:09.559986Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' from sub-workflow 'CallGenome'
[2026-06-06T01:10:09.562566Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_016_chr17_0003] Task initiated on local node
[2026-06-06T01:10:09.624092Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_016_chr17_0003' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.813606Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+callGenomeSegment_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.814564Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.817044Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+compressSegmentOutput_chromId_018_chr19_0000] Task initiated on local node
[2026-06-06T01:13:32.878625Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+compressSegmentOutput_chromId_018_chr19_0000' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.878861Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+completedAllGenomeSegments' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.879002Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.879318Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+mergeRunStats' from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.880099Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_concat_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.883151Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+SNV_concat_vcf] Task initiated on local node
[2026-06-06T01:13:32.884191Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+mergeRunStats] Task initiated on local node
[2026-06-06T01:13:32.885106Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+Indel_concat_vcf] Task initiated on local node
[2026-06-06T01:13:32.912417Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.912499Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_concat_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.912717Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+SNV_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.913140Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+Indel_index_vcf' from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.913704Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+mergeRunStats' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.915870Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+SNV_index_vcf] Task initiated on local node
[2026-06-06T01:13:32.916635Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+Indel_index_vcf] Task initiated on local node
[2026-06-06T01:13:32.978692Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+SNV_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.978772Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+Indel_index_vcf' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.978957Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Launching command task: 'CallGenome+removeTmpDir' from sub-workflow 'CallGenome'
[2026-06-06T01:13:32.981088Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskRunner:CallGenome+removeTmpDir] Task initiated on local node
[2026-06-06T01:13:33.010911Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed command task: 'CallGenome+removeTmpDir' launched from sub-workflow 'CallGenome'
[2026-06-06T01:13:33.042852Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [TaskManager] Completed sub-workflow task: 'CallGenome' launched from master workflow
[2026-06-06T01:13:48.003749Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Strelka somatic workflow successfully completed.
[2026-06-06T01:13:48.003749Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] 
[2026-06-06T01:13:48.003749Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] 	workflow version: 2.9.10
[2026-06-06T01:13:48.003802Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] 
[2026-06-06T01:13:48.003809Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Workflow successfully completed all tasks
[2026-06-06T01:13:48.003815Z] [nf-ce3fb04cb5d73ef9c703508b70701e98-7cf6f-nbfgc] [586_1] [WorkflowRunner] Elapsed time for full workflow: 723 sec