cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i NTC_0002_0015_A23MHWWLT4_1.md.bam --interval xgen-exome-hyb-panel-v2-targets-hg38_AND_altera_v3_targets_postQC_hg38_AND_foresight_clarity.bed --algo QualCal -k dbsnp_146.hg38.vcf.gz -k Mills_and_1000G_gold_standard.indels.hg38.vcf.gz -k Homo_sapiens_assembly38.known_indels.vcf.gz NTC_0002_0015_A23MHWWLT4_1.table
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:119919268, elapsed 0.0s, est remaining 0.7s, peak mem 236MB, user 0.0s, sys 0.0s, output queue size 6606
progress 10% @chr2:21001730, elapsed 0.1s, est remaining 0.6s, peak mem 359MB, user 0.0s, sys 0.0s, output queue size 9319
progress 15% @chr2:189042720, elapsed 0.1s, est remaining 0.6s, peak mem 443MB, user 0.0s, sys 0.0s, output queue size 19672
progress 20% @chr3:97871842, elapsed 0.1s, est remaining 0.6s, peak mem 525MB, user 0.0s, sys 0.1s, output queue size 10929
progress 25% @chr4:88436905, elapsed 0.2s, est remaining 0.5s, peak mem 606MB, user 0.0s, sys 0.1s, output queue size 21181
progress 30% @chr5:144206715, elapsed 0.2s, est remaining 0.5s, peak mem 663MB, user 0.0s, sys 0.1s, output queue size 31244
progress 35% @chr6:127119291, elapsed 0.2s, est remaining 0.4s, peak mem 737MB, user 0.0s, sys 0.1s, output queue size 10314
progress 40% @chr7:128339227, elapsed 0.3s, est remaining 0.4s, peak mem 845MB, user 0.0s, sys 0.1s, output queue size 19798
progress 45% @chr8:144930738, elapsed 0.3s, est remaining 0.4s, peak mem 917MB, user 0.0s, sys 0.2s, output queue size 29164
progress 50% @chr10:32824518, elapsed 0.3s, est remaining 0.3s, peak mem 1020MB, user 0.1s, sys 0.2s, output queue size 39123
progress 55% @chr11:48306223, elapsed 0.4s, est remaining 0.3s, peak mem 1076MB, user 0.1s, sys 0.2s, output queue size 49565
progress 60% @chr12:23534219, elapsed 0.4s, est remaining 0.3s, peak mem 1109MB, user 0.1s, sys 0.2s, output queue size 3074
progress 65% @chr13:48495261, elapsed 0.4s, est remaining 0.2s, peak mem 1160MB, user 0.1s, sys 0.2s, output queue size 14066
progress 70% @chr15:42456958, elapsed 0.5s, est remaining 0.2s, peak mem 1182MB, user 0.1s, sys 0.2s, output queue size 24106
progress 75% @chr16:30927745, elapsed 0.5s, est remaining 0.2s, peak mem 1259MB, user 0.1s, sys 0.2s, output queue size 33668
progress 80% @chr17:42536273, elapsed 0.5s, est remaining 0.1s, peak mem 1304MB, user 0.1s, sys 0.2s, output queue size 44364
progress 85% @chr19:5664397, elapsed 0.6s, est remaining 0.1s, peak mem 1322MB, user 0.1s, sys 0.2s, output queue size 54764
progress 90% @chr19:55762598, elapsed 0.6s, est remaining 0.1s, peak mem 1340MB, user 0.1s, sys 0.2s, output queue size 64269
progress 95% @chr22:36566353, elapsed 0.6s, est remaining 0.0s, peak mem 1349MB, user 0.1s, sys 0.2s, output queue size 74043
progress 100% @chr6_GL000254v2_alt:3881705, elapsed 0.7s, est remaining 0.0s, peak mem 1394MB, user 0.1s, sys 0.2s, output queue size 83665
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000c06f2
  features: bfebfbff 7ffefbff
  extended: f3bfb7ef fb417ffe
  amd bits: 2c100800 00000121
     brand: INTEL(R) XEON(R) PLATINUM 8559C
threads: 31 max 192
algo: QualCal
license: sentieon:QualCal=31
input file size: 2828557
reads: 42902
contig: 201779 intervals 37922265 bases
advance: 208647 calls 0.001 user 0.000 sys 0.091 real
done: 1 calls 0.141 user 0.089 sys 0.235 real
execute: 1 calls 0.005 user 0.011 sys 0.701 real
fetch_reads: 208647 calls 0.000 user 0.000 sys 0.048 real
fetch_ref: 194 calls 0.000 user 0.000 sys 0.002 real
fetch_vcf: 194 calls 0.008 user 0.003 sys 0.140 real
idle: 92 calls 0.002 user 0.001 sys 31.719 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
update: 194 calls 0.056 user 0.234 sys 0.530 real
overall: 1465020416 mem 1.755 user 4.789 sys 2.077 real
ls: cannot access '*.table.post': No such file or directory
ls: cannot access '*.recalibrated.bam': No such file or directory
ls: cannot access '*.recalibrated.bam.bai': No such file or directory
ls: cannot access '*.csv': No such file or directory
ls: cannot access '*.pdf': No such file or directory