File Info

Filename
.command.err
Full Path
s3://natera-rnd-pltf-dev-nextflow-scratch-01/work/f9/fdc8ce2c7a3434edb19533ef42fe31/.command.err
Size
3.8 KB
Attempt
cmdline: /opt/conda/share/sentieon-202308.03-3/libexec/driver -t 31 -r Homo_sapiens_assembly38.fasta -i 1136_3LU-T1-TDNA-1_A23MHWWLT4_1.md.bam --algo HsMetricAlgo --targets_list targets/foresight_clarity_targets_hg38.bed --baits_list baits/xgen-exome-hyb-panel-v2_AND_altera_v3_probes_short_hg38_AND_cdx_spike_custom30off4x_hg38_AND_foresight_clarity.bed 1136_3LU-T1-TDNA-1_A23MHWWLT4_1_foresight_clarity_targets_hg38.sentieon.hs_metrics
This software is licensed to bgold@natera.com by Sentieon Inc.
progress 5% @chr1:181000001, elapsed 4.5s, est remaining 86.1s, peak mem 3815MB, user 101.9s, sys 3.8s, output queue size 146
progress 10% @chr2:58000001, elapsed 8.7s, est remaining 78.0s, peak mem 5494MB, user 224.5s, sys 6.9s, output queue size 117
progress 15% @chr3:18000001, elapsed 12.6s, est remaining 71.3s, peak mem 8326MB, user 339.2s, sys 9.4s, output queue size 210
progress 20% @chr3:175000001, elapsed 15.7s, est remaining 62.6s, peak mem 9754MB, user 438.6s, sys 10.7s, output queue size 364
progress 25% @chr4:133000001, elapsed 18.7s, est remaining 56.2s, peak mem 10359MB, user 530.2s, sys 11.6s, output queue size 525
progress 30% @chr5:102000001, elapsed 20.9s, est remaining 48.8s, peak mem 10542MB, user 598.5s, sys 14.2s, output queue size 464
progress 35% @chr6:70000001, elapsed 23.8s, est remaining 44.3s, peak mem 10583MB, user 687.8s, sys 14.9s, output queue size 625
progress 40% @chr7:66000001, elapsed 27.7s, est remaining 41.6s, peak mem 11081MB, user 783.5s, sys 15.9s, output queue size 786
progress 45% @chr8:83000001, elapsed 31.7s, est remaining 38.7s, peak mem 11081MB, user 919.6s, sys 17.0s, output queue size 204
progress 50% @chr9:102000001, elapsed 35.1s, est remaining 35.1s, peak mem 11081MB, user 1013.3s, sys 17.8s, output queue size 366
progress 55% @chr10:73000001, elapsed 39.1s, est remaining 32.0s, peak mem 11081MB, user 1122.7s, sys 18.9s, output queue size 527
progress 60% @chr11:69000001, elapsed 43.0s, est remaining 28.6s, peak mem 11081MB, user 1242.1s, sys 19.9s, output queue size 689
progress 65% @chr13:39000001, elapsed 47.0s, est remaining 25.3s, peak mem 11081MB, user 1357.6s, sys 20.9s, output queue size 672
progress 70% @chr14:71000001, elapsed 49.4s, est remaining 21.2s, peak mem 11081MB, user 1423.0s, sys 21.5s, output queue size 833
progress 75% @chr16:37000001, elapsed 54.3s, est remaining 18.1s, peak mem 11204MB, user 1579.0s, sys 22.9s, output queue size 989
progress 80% @chr18:29000001, elapsed 61.1s, est remaining 15.3s, peak mem 11386MB, user 1759.0s, sys 24.3s, output queue size 1151
progress 85% @chr20:3000001, elapsed 66.8s, est remaining 11.8s, peak mem 11399MB, user 1931.3s, sys 25.5s, output queue size 1313
progress 90% @chr22:36000001, elapsed 70.5s, est remaining 7.8s, peak mem 11711MB, user 2073.4s, sys 26.7s, output queue size 1475
progress 95% @chrY:54000001, elapsed 72.6s, est remaining 3.8s, peak mem 11711MB, user 2116.7s, sys 27.0s, output queue size 1637
progress 100% @chr22:23000001, elapsed 83.4s, est remaining 0.0s, peak mem 11777MB, user 2297.7s, sys 28.6s, output queue size 3635
sw version: sentieon-genomics-202308.03
os version: Linux 6.12.88
cpu vendor: GenuineIntel
 signature: 000a06d1
  features: 1f8bfbff fffab20b
  extended: f1bf27eb 1b407f7e
  amd bits: 2c100800 00000121
     brand: Intel(R) Xeon(R) 6975P-C
threads: 31 max 192
algo: HsMetricAlgo
license: sentieon:Metrics=31
input file size: 77410294291
reads: 1436635500
contig: 3367 intervals 3217346917 bases
advance: 3219322 calls 1170.914 user 25.295 sys 1198.032 real
done: 1 calls 0.000 user 0.005 sys 0.014 real
exec_no_coor: 1 calls 0.011 user 0.000 sys 0.024 real
execute: 1 calls 0.002 user 0.001 sys 83.424 real
idle: 313 calls 0.196 user 0.002 sys 288.881 real
init: 1 calls 0.000 user 0.000 sys 0.000 real
overall: 12349612032 mem 2298.614 user 28.994 sys 84.887 real